RchiOBHm_Chr6g0250541

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001137
Physical Location & Seq
Reverse (-)
6016470 .. 6018493
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22459

Sequence Viewer

Length: 585 bp
ATGCTGTTTTGCTTTCTTTTGTTTATATCAGGAACAGTGAGCTGTCAAAATTTCCAAGTATTTCAGATTTCCAAGCTTTGCTTGCTATTACTGTTCCTGATTCAAGTGATTTATCTGTCAGAAGATTTGTGTTTCAGACCAGCACTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACACTGATAGAGCCAACATCAGGAAACATGGGAATCAGCATGGCTTTTATGGCCGCAGTGAAAGGGTACAAGATGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAAGACTCAGGTACATTCTGAAACTGCAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAACATATATGGAGTGGAGCCTGCTGAAAGTAATAATAGACTAAATGGTGGTAAACCAGTGTTCAAGGGCCATTCTATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

194

Amino Acids

21.06

Weight (kDa)

6.71

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 46 - 91 3.4e-06 Pyridoxal-phosphate dependent enzyme
PALP PF00291 96 - 178 4.6e-21 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AciI CCGC 2 cut(s) 252, 447
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 266, 369
AfiI CCNNNNNNNGG 2 cut(s) 218, 462
AgsI TTSAA 3 cut(s) 104, 157, 565
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 42, 76
AluI AGCT 2 cut(s) 42, 76
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 2 cut(s) 249, 568
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 386, 568
AvaII GGWCC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 452
BccI CCATC 2 cut(s) 268, 464
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 397
BfmI CTRYAG 1 cut(s) 381
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 386, 568
BmiI GGNNCC 2 cut(s) 454, 519
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 462
Bse1I ACTGG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 218, 462
BseMII CTCAG 2 cut(s) 377, 381
BseNI ACTGG 1 cut(s) 557
BshFI GGCC 2 cut(s) 251, 570
BshNI GGYRCC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 218, 462
BsnI GGCC 2 cut(s) 251, 570
BspACI CCGC 2 cut(s) 252, 447
BspANI GGCC 2 cut(s) 251, 570
BspCNI CTCAG 2 cut(s) 376, 382
BspLI GGNNCC 2 cut(s) 454, 519
BspMAI CTGCAG 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 452
BsrI ACTGG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 4 cut(s) 37, 93, 286, 474
BstC8I GCNNGC 2 cut(s) 83, 522
BstDEI CTNAG 2 cut(s) 363, 390
BstMWI GCNNNNNNNGC 2 cut(s) 82, 248
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 2 cut(s) 251, 570
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 4 cut(s) 42, 200, 261, 564
Cac8I GCNNGC 2 cut(s) 83, 522
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 386, 568
Csp6I GTAC 2 cut(s) 265, 368
CviAII CATG 2 cut(s) 226, 238
CviJI RGCY 9 cut(s) 42, 76, 177, 211, 242, 251, 296, 520, 570
CviKI_1 RGCY 9 cut(s) 42, 76, 177, 211, 242, 251, 296, 520, 570
CviQI GTAC 2 cut(s) 265, 368
DdeI CTNAG 2 cut(s) 363, 390
EaeI YGGCCR 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 229, 241
FalI AAGNNNNNCTT 4 cut(s) 65, 97, 161, 193
FatI CATG 2 cut(s) 225, 237
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 251, 570
Hin1II CATG 2 cut(s) 229, 241
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 4 cut(s) 100, 231, 311, 361
Hpy166II GTNNAC 2 cut(s) 421, 554
Hpy188I TCNGA 4 cut(s) 66, 121, 137, 376
Hpy188III TCNNGA 4 cut(s) 30, 97, 219, 289
Hpy8I GTNNAC 2 cut(s) 421, 554
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 4 cut(s) 37, 93, 286, 474
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 248
HpyF3I CTNAG 2 cut(s) 363, 390
Hsp92II CATG 2 cut(s) 229, 241
LmnI GCTCC 2 cut(s) 339, 517
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 500
MboII GAAGA 1 cut(s) 134
MluCI AATT 3 cut(s) 49, 341, 438
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 361, 448
MnlI CCTC 3 cut(s) 272, 394, 443
MseI TTAA 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 82, 248
NlaIII CATG 2 cut(s) 229, 241
NlaIV GGNNCC 2 cut(s) 454, 519
PfeI GAWTC 3 cut(s) 100, 231, 311
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 454, 519
PspPI GGNCC 2 cut(s) 386, 568
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 266, 369
RsaNI GTAC 2 cut(s) 265, 368
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 252
Sau96I GGNCC 2 cut(s) 386, 568
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 189
SetI ASST 5 cut(s) 44, 78, 306, 369, 391
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 386
Sse9I AATT 3 cut(s) 49, 341, 438
SsiI CCGC 2 cut(s) 252, 447
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 4 cut(s) 37, 93, 286, 474
TasI AATT 3 cut(s) 49, 341, 438
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 3 cut(s) 100, 231, 311
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 4 cut(s) 42, 207, 261, 564
TspRI CASTG 4 cut(s) 42, 207, 261, 564
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.