AT4G10265

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000303
Physical Location & Seq
Reverse (-)
6373008 .. 6373667
660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10265.1

Sequence Viewer

Length: 252 bp
ATGAGCTCTGCAAGCAAAACGTGGATGGTTGCTGCAAGCATCGGAGCCGTTGAGGCATTGAAAGACCAACTAGGCGTGTGTCGTTGGAACTACGTGATCCGATCTGCGAATCAGTATCTACGCAACAACTTAAGATCCGTGTCGCAAGCTAAGAAGCTCTCTTCCTCATCAATCGATTATACCAACAAGACCAAGCAAGCTGAAGAATCGCTGAGGACAGTCATGTACTTGAGCTGTTGGGGTCCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

83

Amino Acids

9.27

Weight (kDa)

9.7

Isoelectric Point (pI)

70.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 82 3e-32 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 91, 129
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 227
AflII CTTAAG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 5 cut(s) 6, 149, 157, 200, 234
AluI AGCT 5 cut(s) 6, 149, 157, 200, 234
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 2 cut(s) 91, 129
ApeKI GCWGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 32
BfaI CTAG 2 cut(s) 71, 246
BfrI CTTAAG 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 46, 243
BmsI GCATC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 174
BseGI GGATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 96, 101, 134
BspCNI CTCAG 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 46, 243
BspPI GGATC 2 cut(s) 91, 129
BspTI CTTAAG 1 cut(s) 130
BssMI GATC 3 cut(s) 96, 101, 134
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 166
BstAFI CTTAAG 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 4 cut(s) 13, 37, 147, 198
BstDEI CTNAG 2 cut(s) 150, 212
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 3 cut(s) 99, 104, 137
BstMBI GATC 3 cut(s) 96, 101, 134
BstMWI GCNNNNNNNGC 2 cut(s) 12, 53
BstV1I GCAGC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
Bsu15I ATCGAT 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 4 cut(s) 13, 37, 147, 198
Cfr13I GGNCC 1 cut(s) 242
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 6, 47, 149, 157, 200, 234
CviKI_1 RGCY 6 cut(s) 6, 47, 149, 157, 200, 234
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 150, 212
DpnI GATC 3 cut(s) 98, 103, 136
DpnII GATC 3 cut(s) 96, 101, 134
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 180, 224
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 71, 246
GluI GCNGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 226
HinfI GANTC 2 cut(s) 109, 206
Hpy188I TCNGA 2 cut(s) 44, 101
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 20, 93
HpyCH4V TGCA 2 cut(s) 11, 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 53
HpyF3I CTNAG 2 cut(s) 150, 212
HpySE526I ACGT 2 cut(s) 20, 93
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 3 cut(s) 96, 101, 134
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 48
MaeI CTAG 2 cut(s) 71, 246
MaeII ACGT 2 cut(s) 20, 93
MalI GATC 3 cut(s) 98, 103, 136
MboI GATC 3 cut(s) 96, 101, 134
MboII GAAGA 2 cut(s) 153, 215
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 3 cut(s) 46, 175, 207
MseI TTAA 2 cut(s) 131, 250
MspCI CTTAAG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 12, 53
NdeII GATC 3 cut(s) 96, 101, 134
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 2 cut(s) 46, 243
PfeI GAWTC 2 cut(s) 109, 206
PkrI GCNGC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 46, 243
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 131, 250
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 96, 101, 134
Sau96I GGNCC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 8, 23, 96, 151, 159, 202, 236
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 130, 229
SmoI CTYRAG 2 cut(s) 130, 229
SspMI CTAG 2 cut(s) 71, 246
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 2 cut(s) 23, 96
TaqI TCGA 1 cut(s) 174
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 2 cut(s) 109, 206
Tru1I TTAA 2 cut(s) 131, 250
Tru9I TTAA 2 cut(s) 131, 250
TseI GCWGC 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 127
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 242
XspI CTAG 2 cut(s) 71, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.