Prupe.4G191800_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000303
Physical Location & Seq
Reverse (-)
11523489 .. 11524352
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G191800.1

Sequence Viewer

Length: 270 bp
ATGGTGAATGCAGCTTGCAGGGCTTGGATTGTGGCAGCAAGTATTGGAGCTGTTGAGGCTCTGAAAGACCAAGGAATTTGCAGGTGGAATGGGGTTTTGAGGTCACTGCAACAGCATGCCAAGAACAACATGAGATCATATTCCCAGGCCAAGAAACTCTCTGGGTCTTCTTCTTCAGCAATTTCTAACAAGATGCAGAGGTCACAGGAGGAGAAGGTGAGGAAAGTCATGGAGTTGAACTGCTGGGGTCCTAACACTACTAGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

90

Amino Acids

9.91

Weight (kDa)

10.23

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 14, 50
AluI AGCT 2 cut(s) 14, 50
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 11, 35
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 16, 229
AvaII GGWCC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 23, 47
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 72
BisI GCNGC 2 cut(s) 12, 36
BlsI GCNGC 2 cut(s) 13, 37
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 70, 144
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 70, 144
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 23, 47
BseYI CCCAGC 1 cut(s) 243
BshFI GGCC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 134
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 70, 144
BssMI GATC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 16, 117
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 20, 56
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 23, 47
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 104
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 16, 117
Cfr13I GGNCC 1 cut(s) 248
CviAII CATG 3 cut(s) 116, 130, 229
CviJI RGCY 5 cut(s) 14, 23, 50, 59, 149
CviKI_1 RGCY 5 cut(s) 14, 23, 50, 59, 149
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 3 cut(s) 119, 133, 232
FaiI YATR 4 cut(s) 117, 131, 139, 230
FatI CATG 3 cut(s) 115, 129, 228
Fnu4HI GCNGC 2 cut(s) 12, 36
Fsp4HI GCNGC 2 cut(s) 12, 36
FspBI CTAG 1 cut(s) 261
GluI GCNGC 2 cut(s) 12, 36
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 3 cut(s) 119, 133, 232
HphI GGTGA 2 cut(s) 16, 229
Hpy188I TCNGA 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 5 cut(s) 11, 18, 81, 109, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 56
Hsp92II CATG 3 cut(s) 119, 133, 232
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 4, 67, 131, 147, 158, 191, 229
Lsp1109I GCAGC 2 cut(s) 23, 47
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 102, 201
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 3 cut(s) 159, 162, 165
MluCI AATT 2 cut(s) 75, 180
MnlI CCTC 5 cut(s) 49, 93, 192, 202, 213
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 20, 56
NdeII GATC 1 cut(s) 134
NlaIII CATG 3 cut(s) 119, 133, 232
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 102, 201
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PaqCI CACCTGC 1 cut(s) 72
PctI GAATGC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 13, 37
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
SatI GCNGC 2 cut(s) 12, 36
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 146
SetI ASST 7 cut(s) 16, 52, 86, 104, 203, 219, 266
SfaNI GCATC 1 cut(s) 183
SinI GGWCC 1 cut(s) 248
SphI GCATGC 1 cut(s) 119
Sse9I AATT 2 cut(s) 75, 180
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 70
TasI AATT 2 cut(s) 75, 180
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 2 cut(s) 102, 201
TseI GCWGC 2 cut(s) 11, 35
Tsp45I GTSAC 2 cut(s) 102, 201
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 119
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.