FvH4_6g44460

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000303
Physical Location & Seq
Forward (+)
34249459 .. 34251243
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44460.t1

Sequence Viewer

Length: 615 bp
ATGAGTACTGTTTCAAGAGCAAGCAAGGCCATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCACTGAAGGACCAAGCAGGCATTTGCAGGTGGAACTCACCCACCCTAAGATCCGCGCATCAACAAGCCAAGAAGCATTTCAGGTCATACTCTCAGGCCAACAAGAGCAAGCTCTCTTCTTCTTCAACCTCTGCTTTGAGCAGAGTCAGAAACGAGAAGCTGAAGAAATCGGAGGAGTCTTTGAAGACTGTTATGTACCTGAGCTGCTGGGTTAGCATCAAACAAACAAAGAACATCACACTTTGGAAGATCAAGATCATCAACAATATGAGTTCTTCATCATCAGTAGCAAACAGGGCTTGGATTGTGGCAGCGAGTGTGGGAGCTGTGGAGGCCTTGAAAAGAGACCAAGCAGGGATCTGCAGGTTGAGTCAAACAATGAGATTGGTGCAACAACATGCCAAGACACACCTCAGATCTTTTACTCAGGCTAACCAGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGGAAGCTCAGAGATGAGATGCCCAAGCAGTCTGAGGAGTCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

205

Amino Acids

22.81

Weight (kDa)

10.59

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 90 4.1e-29 Wound-induced protein
DUF3774 PF12609 123 - 203 6e-24 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 414
AccII CGCG 1 cut(s) 116
AciI CCGC 1 cut(s) 114
AclWI GGATC 2 cut(s) 105, 425
AcuI CTGAAG 2 cut(s) 86, 242
AfaI GTAC 3 cut(s) 7, 257, 590
AgsI TTSAA 5 cut(s) 15, 186, 244, 400, 531
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 5 cut(s) 172, 220, 264, 386, 538
AluI AGCT 5 cut(s) 172, 220, 264, 386, 538
Alw26I GTCTC 2 cut(s) 399, 493
AlwI GGATC 2 cut(s) 105, 425
AoxI GGCC 3 cut(s) 27, 156, 393
ApeKI GCWGC 3 cut(s) 38, 264, 371
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 70, 605
AsuHPI GGTGA 1 cut(s) 90
AvaII GGWCC 2 cut(s) 70, 605
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 50, 251, 383
BcoDI GTCTC 2 cut(s) 399, 493
BfmI CTRYAG 1 cut(s) 421
BfuAI ACCTGC 2 cut(s) 78, 414
BglI GCCNNNNNGGC 1 cut(s) 35
BglII AGATCT 1 cut(s) 476
BisI GCNGC 3 cut(s) 39, 265, 372
BlsI GCNGC 3 cut(s) 40, 266, 373
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 70, 605
BmgT120I GGNCC 2 cut(s) 70, 605
BmiI GGNNCC 2 cut(s) 606, 607
BmsI GCATC 3 cut(s) 127, 285, 540
BpiI GAAGAC 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 399
Bse8I GATNNNNATC 1 cut(s) 314
BseJI GATNNNNATC 1 cut(s) 314
BseMII CTCAG 6 cut(s) 167, 251, 487, 500, 553, 555
BseRI GAGGAG 2 cut(s) 248, 581
BseXI GCAGC 3 cut(s) 50, 251, 383
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 3 cut(s) 29, 158, 395
BslFI GGGAC 1 cut(s) 591
BsmAI GTCTC 2 cut(s) 399, 493
BsmFI GGGAC 1 cut(s) 591
BsnI GGCC 3 cut(s) 29, 158, 395
Bso31I GGTCTC 1 cut(s) 399
Bsp143I GATC 5 cut(s) 110, 309, 315, 417, 476
BspACI CCGC 1 cut(s) 114
BspANI GGCC 3 cut(s) 29, 158, 395
BspCNI CTCAG 6 cut(s) 166, 252, 486, 499, 552, 556
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 606, 607
BspMAI CTGCAG 1 cut(s) 425
BspMI ACCTGC 2 cut(s) 78, 414
BspPI GGATC 2 cut(s) 105, 425
BspTNI GGTCTC 1 cut(s) 399
BssMI GATC 5 cut(s) 110, 309, 315, 417, 476
Bst4CI ACNGT 2 cut(s) 10, 250
Bst6I CTCTTC 2 cut(s) 181, 511
BstC8I GCNNGC 3 cut(s) 22, 79, 170
BstDEI CTNAG 7 cut(s) 107, 153, 260, 473, 486, 539, 564
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 5 cut(s) 113, 312, 318, 420, 479
BstMAI GTCTC 2 cut(s) 399, 493
BstMBI GATC 5 cut(s) 110, 309, 315, 417, 476
BstMWI GCNNNNNNNGC 5 cut(s) 26, 35, 273, 356, 392
BstNSI RCATGY 1 cut(s) 461
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 3 cut(s) 50, 251, 383
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 3 cut(s) 110, 417, 476
BstYI RGATCY 3 cut(s) 110, 417, 476
BsuRI GGCC 3 cut(s) 29, 158, 395
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 2 cut(s) 78, 414
Cac8I GCNNGC 3 cut(s) 22, 79, 170
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 70, 605
Csp6I GTAC 3 cut(s) 6, 256, 589
CviAII CATG 2 cut(s) 458, 586
CviQI GTAC 3 cut(s) 6, 256, 589
DdeI CTNAG 7 cut(s) 107, 153, 260, 473, 486, 539, 564
DpnI GATC 5 cut(s) 112, 311, 317, 419, 478
DpnII GATC 5 cut(s) 110, 309, 315, 417, 476
Eam1104I CTCTTC 2 cut(s) 181, 511
EarI CTCTTC 2 cut(s) 181, 511
Eco147I AGGCCT 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 399
Eco47I GGWCC 2 cut(s) 70, 605
Eco57I CTGAAG 2 cut(s) 86, 242
EcoO109I RGGNCCY 1 cut(s) 605
FaeI CATG 2 cut(s) 461, 589
FaiI YATR 7 cut(s) 148, 254, 329, 459, 514, 575, 587
FaqI GGGAC 1 cut(s) 591
FatI CATG 2 cut(s) 457, 585
Fnu4HI GCNGC 3 cut(s) 39, 265, 372
Fsp4HI GCNGC 3 cut(s) 39, 265, 372
GlaI GCGC 1 cut(s) 117
GluI GCNGC 3 cut(s) 39, 265, 372
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 3 cut(s) 29, 158, 395
HhaI GCGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 461, 589
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 5 cut(s) 204, 236, 430, 501, 569
HphI GGTGA 1 cut(s) 90
Hpy188I TCNGA 5 cut(s) 209, 232, 476, 542, 565
Hpy188III TCNNGA 2 cut(s) 15, 313
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 10, 250
HpyCH4V TGCA 3 cut(s) 87, 423, 451
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 35, 273, 356, 392
HpyF3I CTNAG 7 cut(s) 107, 153, 260, 473, 486, 539, 564
Hsp92II CATG 2 cut(s) 461, 589
HspAI GCGC 1 cut(s) 116
KflI GGGWCCC 1 cut(s) 605
Kzo9I GATC 5 cut(s) 110, 309, 315, 417, 476
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 3 cut(s) 50, 251, 383
LweI GCATC 3 cut(s) 127, 285, 540
MalI GATC 5 cut(s) 112, 311, 317, 419, 478
MboI GATC 5 cut(s) 110, 309, 315, 417, 476
MboII GAAGA 8 cut(s) 168, 171, 174, 235, 256, 319, 327, 498
MflI RGATCY 3 cut(s) 110, 417, 476
MlyI GAGTC 5 cut(s) 213, 245, 439, 495, 578
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 9 cut(s) 52, 199, 226, 385, 482, 520, 559, 570, 602
MroXI GAANNNNTTC 1 cut(s) 137
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 5 cut(s) 26, 35, 273, 356, 392
NdeII GATC 5 cut(s) 110, 309, 315, 417, 476
NlaIII CATG 2 cut(s) 461, 589
NlaIV GGNNCC 2 cut(s) 606, 607
NspI RCATGY 1 cut(s) 461
PaqCI CACCTGC 1 cut(s) 78
PceI AGGCCT 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 40, 266, 373
PleI GAGTC 5 cut(s) 212, 244, 438, 495, 577
PpsI GAGTC 5 cut(s) 212, 244, 438, 495, 577
PpuMI RGGWCCY 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 606, 607
PspPI GGNCC 2 cut(s) 70, 605
PspPPI RGGWCCY 1 cut(s) 605
PstI CTGCAG 1 cut(s) 425
PsuI RGATCY 3 cut(s) 110, 417, 476
RsaI GTAC 3 cut(s) 7, 257, 590
RsaNI GTAC 3 cut(s) 6, 256, 589
SatI GCNGC 3 cut(s) 39, 265, 372
Sau3AI GATC 5 cut(s) 110, 309, 315, 417, 476
Sau96I GGNCC 2 cut(s) 70, 605
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 5 cut(s) 213, 245, 439, 495, 578
SfaNI GCATC 3 cut(s) 127, 285, 540
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 2 cut(s) 70, 605
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 1 cut(s) 114
StuI AGGCCT 1 cut(s) 395
TaaI ACNGT 2 cut(s) 10, 250
TatI WGTACW 1 cut(s) 5
TscAI CASTG 1 cut(s) 69
TseI GCWGC 3 cut(s) 38, 264, 371
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 70, 605
XceI RCATGY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.