MD11G1235200.v1.1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000303
Physical Location & Seq
Forward (+)
34224810 .. 34227484
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1235200.v1.1.491

Sequence Viewer

Length: 501 bp
ATGAGTGCAGCGTGCAGAGCTTGGATTGTGGCAGCAAGTATTGGAGCAGTTGAGGCACTCAAAGACCAAGGAGTCTGCAGGTGGAATGGGGTTCTGAGATCAGTCCACCAACATGTCAAGAACAACATCAGATCCTATTCCCAAGTCAAGAAACTCTCCGACTCTTCGTCTTCTGCAATTTCTATGAAGATGCAGAGATCACAGGAAGACAAGTTGAGAAAAGTCATGGAATTGAACTGTTGGGCGTGCAGAGCTTGGATTGTGGCAGCAAGTATTGGAGCAGTTGAGGCACTGAAAGACCAAGGAGTCTGCAGGTGGAATGGGGTTCTGAGAGCAGTCCACCACCATGCCAAGAGCAACATCAGATCCTATTCCCAAGCCAAGACACTCTCCGACGCTTCGTCTTCTGCAATTTCTATGACGATGAAGAGATCACAGGAAGACAAGTTGAGAAAAGTCATGGAATTGAACTGTTGGGGTCCAAATACCATAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

9.99

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 81 3.1e-26 Wound-induced protein
DUF3774 PF12609 88 - 161 6.3e-28 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 69, 303
AasI GACNNNNNNGTC 2 cut(s) 71, 305
Acc36I ACCTGC 2 cut(s) 69, 303
AclWI GGATC 2 cut(s) 126, 360
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 2 cut(s) 235, 469
AhdI GACNNNNNGTC 2 cut(s) 166, 400
AluBI AGCT 2 cut(s) 20, 254
AluI AGCT 2 cut(s) 20, 254
AlwI GGATC 2 cut(s) 126, 360
ApeKI GCWGC 3 cut(s) 8, 32, 266
AspS9I GGNCC 1 cut(s) 479
AvaII GGWCC 1 cut(s) 479
BbsI GAAGAC 4 cut(s) 162, 213, 396, 447
BbvI GCAGC 3 cut(s) 20, 44, 278
BfmI CTRYAG 2 cut(s) 76, 310
BfuAI ACCTGC 2 cut(s) 69, 303
BisI GCNGC 3 cut(s) 9, 33, 267
BlsI GCNGC 3 cut(s) 10, 34, 268
Bme18I GGWCC 1 cut(s) 479
BmeRI GACNNNNNGTC 2 cut(s) 166, 400
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 480
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 4 cut(s) 162, 213, 396, 447
BsaJI CCNNGG 2 cut(s) 67, 301
BseDI CCNNGG 2 cut(s) 67, 301
BseMII CTCAG 2 cut(s) 86, 320
BseXI GCAGC 3 cut(s) 20, 44, 278
BsgI GTGCAG 3 cut(s) 27, 34, 268
Bsp143I GATC 5 cut(s) 98, 131, 197, 365, 431
BspCNI CTCAG 2 cut(s) 87, 321
BspLI GGNNCC 1 cut(s) 480
BspMAI CTGCAG 2 cut(s) 80, 314
BspMI ACCTGC 2 cut(s) 69, 303
BspPI GGATC 2 cut(s) 126, 360
BssECI CCNNGG 2 cut(s) 67, 301
BssMI GATC 5 cut(s) 98, 131, 197, 365, 431
BssT1I CCWWGG 2 cut(s) 67, 301
Bst4CI ACNGT 2 cut(s) 239, 473
Bst6I CTCTTC 2 cut(s) 169, 422
BstC8I GCNNGC 2 cut(s) 13, 247
BstDEI CTNAG 2 cut(s) 95, 329
BstKTI GATC 5 cut(s) 101, 134, 200, 368, 434
BstMBI GATC 5 cut(s) 98, 131, 197, 365, 431
BstMWI GCNNNNNNNGC 4 cut(s) 17, 53, 251, 287
BstNSI RCATGY 1 cut(s) 116
BstSFI CTRYAG 2 cut(s) 76, 310
BstV1I GCAGC 3 cut(s) 20, 44, 278
BstV2I GAAGAC 4 cut(s) 162, 213, 396, 447
BstX2I RGATCY 2 cut(s) 131, 365
BstYI RGATCY 2 cut(s) 131, 365
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 2 cut(s) 69, 303
Cac8I GCNNGC 2 cut(s) 13, 247
Cfr13I GGNCC 1 cut(s) 479
CseI GACGC 1 cut(s) 404
CviAII CATG 4 cut(s) 113, 226, 347, 460
CviJI RGCY 3 cut(s) 20, 254, 380
CviKI_1 RGCY 3 cut(s) 20, 254, 380
DdeI CTNAG 2 cut(s) 95, 329
DpnI GATC 5 cut(s) 100, 133, 199, 367, 433
DpnII GATC 5 cut(s) 98, 131, 197, 365, 431
DrdI GACNNNNNNGTC 2 cut(s) 71, 305
DriI GACNNNNNGTC 2 cut(s) 166, 400
DseDI GACNNNNNNGTC 2 cut(s) 71, 305
Eam1104I CTCTTC 2 cut(s) 169, 422
Eam1105I GACNNNNNGTC 2 cut(s) 166, 400
EarI CTCTTC 2 cut(s) 169, 422
Eco130I CCWWGG 2 cut(s) 67, 301
Eco47I GGWCC 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 67, 301
ErhI CCWWGG 2 cut(s) 67, 301
FaeI CATG 4 cut(s) 116, 229, 350, 463
FaiI YATR 7 cut(s) 114, 185, 227, 348, 419, 461, 491
FatI CATG 4 cut(s) 112, 225, 346, 459
Fnu4HI GCNGC 3 cut(s) 9, 33, 267
Fsp4HI GCNGC 3 cut(s) 9, 33, 267
GluI GCNGC 3 cut(s) 9, 33, 267
HgaI GACGC 1 cut(s) 404
Hin1II CATG 4 cut(s) 116, 229, 350, 463
HinfI GANTC 3 cut(s) 72, 161, 306
Hpy166II GTNNAC 2 cut(s) 106, 340
Hpy188I TCNGA 6 cut(s) 96, 131, 160, 330, 365, 394
Hpy188III TCNNGA 2 cut(s) 118, 148
Hpy8I GTNNAC 2 cut(s) 106, 340
Hpy99I CGWCG 1 cut(s) 398
HpyCH4III ACNGT 2 cut(s) 239, 473
HpyCH4V TGCA 8 cut(s) 8, 15, 78, 176, 193, 249, 312, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 53, 251, 287
HpyF3I CTNAG 2 cut(s) 95, 329
Hsp92II CATG 4 cut(s) 116, 229, 350, 463
Kzo9I GATC 5 cut(s) 98, 131, 197, 365, 431
LmnI GCTCC 2 cut(s) 44, 278
LpnPI CCDG 4 cut(s) 64, 188, 298, 422
Lsp1109I GCAGC 3 cut(s) 20, 44, 278
LweI GCATC 1 cut(s) 180
MalI GATC 5 cut(s) 100, 133, 199, 367, 433
MboI GATC 5 cut(s) 98, 131, 197, 365, 431
MboII GAAGA 7 cut(s) 156, 162, 199, 218, 396, 439, 452
MflI RGATCY 2 cut(s) 131, 365
MluCI AATT 4 cut(s) 177, 230, 411, 464
MlyI GAGTC 3 cut(s) 81, 155, 315
MmeI TCCRAC 2 cut(s) 183, 417
MnlI CCTC 2 cut(s) 46, 280
MslI CAYNNNNRTG 2 cut(s) 111, 345
MwoI GCNNNNNNNGC 4 cut(s) 17, 53, 251, 287
NdeII GATC 5 cut(s) 98, 131, 197, 365, 431
NlaIII CATG 4 cut(s) 116, 229, 350, 463
NlaIV GGNNCC 1 cut(s) 480
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 2 cut(s) 69, 303
PciI ACATGT 1 cut(s) 112
PkrI GCNGC 3 cut(s) 10, 34, 268
PleI GAGTC 3 cut(s) 80, 155, 314
PpsI GAGTC 3 cut(s) 80, 155, 314
PscI ACATGT 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 2 cut(s) 80, 314
PsuI RGATCY 2 cut(s) 131, 365
RseI CAYNNNNRTG 2 cut(s) 111, 345
SatI GCNGC 3 cut(s) 9, 33, 267
Sau3AI GATC 5 cut(s) 98, 131, 197, 365, 431
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 3 cut(s) 81, 155, 315
SetI ASST 4 cut(s) 22, 83, 256, 317
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 2 cut(s) 76, 310
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 2 cut(s) 111, 345
Sse9I AATT 4 cut(s) 177, 230, 411, 464
StyI CCWWGG 2 cut(s) 67, 301
TaaI ACNGT 2 cut(s) 239, 473
TasI AATT 4 cut(s) 177, 230, 411, 464
TscAI CASTG 1 cut(s) 297
TseI GCWGC 3 cut(s) 8, 32, 266
TspDTI ATGAA 2 cut(s) 200, 440
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 479
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.