MD17G1085100.v1.1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
7003509 .. 7004879
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1085100.v1.1.491

Sequence Viewer

Length: 408 bp
ATGGTGGATAGAGCTCCGGCTGGAGTGTTTACACCACCATTATCCAGTTGTCTGCAATTCTCGGCACTGCCGCTTGTGGAATTTCCCACTGGCTTCCTTTCCTTTGTGGTTGCGATTTGGATATTTATGGTTCTTGTTGCAGGTAGCGCTTGGATCGTGGGGGCAACAGTTGGTGTTGTGGAAGTACTGAAAGACCAAGGGGTGTGCAGGTGGAACGACCCCATAAGACTGATGCACCAGCATGCCAAGAACCATCTCACCAGGTCGTTTTCTCAGGCCAAGGAGCTGTATTCTTCTCCTTCTTCTGCTGCTAGGGTTTCAAACACAATCATGCGAGAAGAGAAAGCAAAGCCGGCAGAGGAGTCTATGAGGAAAGTTATGTATCTAAATTCTTGGGTTCCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

9.1

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 53 - 134 1.2e-26 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 198
Acc36I ACCTGC 2 cut(s) 131, 198
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 80, 388
AfaI GTAC 1 cut(s) 186
AfeI AGCGCT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 321
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 14, 286
AluI AGCT 2 cut(s) 14, 286
Alw21I GWGCWC 1 cut(s) 16
AlwI GGATC 1 cut(s) 161
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 2 cut(s) 80, 388
AspLEI GCGC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 250
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 262
BfaI CTAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 150
BfuAI ACCTGC 2 cut(s) 131, 198
BisI GCNGC 2 cut(s) 71, 309
BlsI GCNGC 2 cut(s) 72, 310
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 196, 279
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 45, 94
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 196, 279
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 45, 94
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 17, 353
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 399
BspMI ACCTGC 2 cut(s) 131, 198
BspPI GGATC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 2 cut(s) 45, 94
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 196, 279
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 196, 279
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 243, 354
BstDEI CTNAG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 146, 353
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 278
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 65, 87
BveI ACCTGC 2 cut(s) 131, 198
Cac8I GCNNGC 2 cut(s) 243, 354
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 352
CsiI ACCWGGT 1 cut(s) 260
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 242, 331
CviJI RGCY 6 cut(s) 14, 20, 93, 278, 286, 352
CviKI_1 RGCY 6 cut(s) 14, 20, 93, 278, 286, 352
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 196, 279
Eco24I GRGCYC 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 196, 279
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 196, 279
FaeI CATG 2 cut(s) 245, 334
FaiI YATR 6 cut(s) 128, 224, 243, 332, 368, 380
FatI CATG 2 cut(s) 241, 330
Fnu4HI GCNGC 2 cut(s) 71, 309
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 71, 309
FspBI CTAG 1 cut(s) 312
GlaI GCGC 1 cut(s) 148
GluI GCNGC 2 cut(s) 71, 309
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 17, 353
HhaI GCGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 245, 334
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 1 cut(s) 362
HpaII CCGG 2 cut(s) 17, 353
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 55, 140, 207, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 353
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 2 cut(s) 245, 334
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 19, 283
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 222
MabI ACCWGGT 1 cut(s) 260
MaeI CTAG 1 cut(s) 312
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 3 cut(s) 285, 294, 350
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 3 cut(s) 56, 80, 388
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 2 cut(s) 352, 363
MroNI GCCGGC 1 cut(s) 352
MslI CAYNNNNRTG 2 cut(s) 240, 329
MspI CCGG 2 cut(s) 17, 353
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 146, 353
NaeI GCCGGC 1 cut(s) 354
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 2 cut(s) 245, 334
NlaIV GGNNCC 1 cut(s) 399
NmeAIII GCCGAG 1 cut(s) 41
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 354
PkrI GCNGC 2 cut(s) 72, 310
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 399
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 2 cut(s) 240, 329
SacI GAGCTC 1 cut(s) 16
SatI GCNGC 2 cut(s) 71, 309
Sau3AI GATC 1 cut(s) 153
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 16
SetI ASST 5 cut(s) 16, 145, 212, 266, 288
SexAI ACCWGGT 1 cut(s) 260
SfaNI GCATC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 240, 329
SphI GCATGC 1 cut(s) 245
Sse9I AATT 3 cut(s) 56, 80, 388
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 196, 279
TaaI ACNGT 1 cut(s) 169
TasI AATT 3 cut(s) 56, 80, 388
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 73
TscAI CASTG 2 cut(s) 72, 94
TseI GCWGC 1 cut(s) 308
TspRI CASTG 2 cut(s) 72, 94
XapI RAATTY 2 cut(s) 80, 388
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.