FvH4_6g44470

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000303
Physical Location & Seq
Forward (+)
34254892 .. 34256504
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44470.t1

Sequence Viewer

Length: 558 bp
ATGAGTACTACTTCAAGAGCAAGCAAGGCCGTTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCATTGAAGGACCAAGGCATTTGCAGATGGAACACACCCACCATAAGATCCGTGCATCAGCAAGCCAAGAACCATTTCAGGTCATTTTCTCAGGTCAACAAGAACAAGCTCTCCTCTTCTTCAACTTCAGCTTTGAGCAAAGTCAGGGATGAGAAGCACAAGAAGTCAGAGGAGTCTTTGAGGACTGTCATGTACTTAAGCTGCTGGGGTCCCAACTATTCTTCATCATCAGTAGCAAACAGGGCTTGGATGGTAGCAGCGAGTGTGGGAGCTGTGGAGGCCTTGAAAAGAGACCAAGGGATCTGCAGGTTGAGTCAAACAATGAGATTGGTGCAACAACATGCCAAGACCCACCTCAGATCTCTTTCTCAGGCGAACCAGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGGAAACTCAGAGATGAGATGCTGAACCAGTCTGAGGAGTCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

186

Amino Acids

20.7

Weight (kDa)

10.32

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 91 1.1e-32 Wound-induced protein
DUF3774 PF12609 105 - 184 1.3e-24 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AclWI GGATC 2 cut(s) 102, 368
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 3 cut(s) 7, 254, 533
AfiI CCNNNNNNNGG 1 cut(s) 508
AflII CTTAAG 1 cut(s) 256
AgsI TTSAA 5 cut(s) 15, 67, 183, 346, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 4 cut(s) 169, 191, 261, 332
AluI AGCT 4 cut(s) 169, 191, 261, 332
Alw26I GTCTC 2 cut(s) 345, 436
AlwI GGATC 2 cut(s) 102, 368
AoxI GGCC 2 cut(s) 27, 339
ApeKI GCWGC 3 cut(s) 38, 261, 317
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 3 cut(s) 70, 269, 548
AvaII GGWCC 3 cut(s) 70, 269, 548
BbvI GCAGC 3 cut(s) 50, 248, 329
BccI CCATC 2 cut(s) 81, 304
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 2 cut(s) 345, 436
BfmI CTRYAG 1 cut(s) 364
BfrI CTTAAG 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 357
BglI GCCNNNNNGGC 1 cut(s) 35
BglII AGATCT 1 cut(s) 419
BisI GCNGC 3 cut(s) 39, 262, 318
BlsI GCNGC 3 cut(s) 40, 263, 319
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 3 cut(s) 70, 269, 548
BmgT120I GGNCC 3 cut(s) 70, 269, 548
BmiI GGNNCC 4 cut(s) 270, 271, 549, 550
BmsI GCATC 2 cut(s) 124, 483
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 73, 355
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 73, 355
BseGI GGATG 2 cut(s) 214, 315
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 5 cut(s) 164, 430, 443, 496, 498
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 3 cut(s) 163, 245, 524
BseXI GCAGC 3 cut(s) 50, 248, 329
BseYI CCCAGC 1 cut(s) 264
BshFI GGCC 2 cut(s) 29, 341
BslFI GGGAC 2 cut(s) 255, 534
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 2 cut(s) 345, 436
BsmFI GGGAC 2 cut(s) 255, 534
BsnI GGCC 2 cut(s) 29, 341
Bso31I GGTCTC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 107, 360, 419
BspANI GGCC 2 cut(s) 29, 341
BspCNI CTCAG 5 cut(s) 163, 429, 442, 495, 499
BspLI GGNNCC 4 cut(s) 270, 271, 549, 550
BspMAI CTGCAG 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 102, 368
BspTI CTTAAG 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 73, 355
BssMI GATC 3 cut(s) 107, 360, 419
BssT1I CCWWGG 2 cut(s) 73, 355
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 181, 454
BstAFI CTTAAG 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 22, 123
BstDEI CTNAG 5 cut(s) 150, 416, 429, 482, 507
BstF5I GGATG 2 cut(s) 214, 315
BstKTI GATC 3 cut(s) 110, 363, 422
BstMAI GTCTC 2 cut(s) 345, 436
BstMBI GATC 3 cut(s) 107, 360, 419
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 302, 338
BstNSI RCATGY 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 50, 248, 329
BstX2I RGATCY 3 cut(s) 107, 360, 419
BstYI RGATCY 3 cut(s) 107, 360, 419
BsuRI GGCC 2 cut(s) 29, 341
BtsCI GGATG 2 cut(s) 214, 315
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 22, 123
Cfr13I GGNCC 3 cut(s) 70, 269, 548
Csp6I GTAC 3 cut(s) 6, 253, 532
CviAII CATG 3 cut(s) 250, 401, 529
CviJI RGCY 8 cut(s) 29, 125, 169, 191, 261, 305, 332, 341
CviKI_1 RGCY 8 cut(s) 29, 125, 169, 191, 261, 305, 332, 341
CviQI GTAC 3 cut(s) 6, 253, 532
DdeI CTNAG 5 cut(s) 150, 416, 429, 482, 507
DpnI GATC 3 cut(s) 109, 362, 421
DpnII GATC 3 cut(s) 107, 360, 419
Eam1104I CTCTTC 2 cut(s) 181, 454
EarI CTCTTC 2 cut(s) 181, 454
Eco130I CCWWGG 2 cut(s) 73, 355
Eco147I AGGCCT 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 3 cut(s) 70, 269, 548
Eco57I CTGAAG 1 cut(s) 171
EcoO109I RGGNCCY 2 cut(s) 269, 548
EcoT14I CCWWGG 2 cut(s) 73, 355
ErhI CCWWGG 2 cut(s) 73, 355
FaeI CATG 3 cut(s) 253, 404, 532
FaiI YATR 6 cut(s) 104, 251, 402, 457, 518, 530
FaqI GGGAC 2 cut(s) 255, 534
FatI CATG 3 cut(s) 249, 400, 528
Fnu4HI GCNGC 3 cut(s) 39, 262, 318
FokI GGATG 2 cut(s) 221, 322
Fsp4HI GCNGC 3 cut(s) 39, 262, 318
GluI GCNGC 3 cut(s) 39, 262, 318
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 29, 341
Hin1II CATG 3 cut(s) 253, 404, 532
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 233, 373, 444, 512
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 4 cut(s) 229, 419, 485, 508
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 84, 115, 366, 394
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 302, 338
HpyF3I CTNAG 5 cut(s) 150, 416, 429, 482, 507
Hsp92II CATG 3 cut(s) 253, 404, 532
KflI GGGWCCC 2 cut(s) 269, 548
Kzo9I GATC 3 cut(s) 107, 360, 419
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 9 cut(s) 124, 137, 190, 250, 286, 352, 416, 452, 515
Lsp1109I GCAGC 3 cut(s) 50, 248, 329
LweI GCATC 2 cut(s) 124, 483
MalI GATC 3 cut(s) 109, 362, 421
MboI GATC 3 cut(s) 107, 360, 419
MboII GAAGA 4 cut(s) 168, 171, 273, 441
MflI RGATCY 3 cut(s) 107, 360, 419
MlyI GAGTC 4 cut(s) 242, 382, 438, 521
MmeI TCCRAC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 302, 338
NdeII GATC 3 cut(s) 107, 360, 419
NlaIII CATG 3 cut(s) 253, 404, 532
NlaIV GGNNCC 4 cut(s) 270, 271, 549, 550
NspI RCATGY 1 cut(s) 404
PceI AGGCCT 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 40, 263, 319
PleI GAGTC 4 cut(s) 241, 381, 438, 520
PpsI GAGTC 4 cut(s) 241, 381, 438, 520
PpuMI RGGWCCY 2 cut(s) 269, 548
Psp5II RGGWCCY 2 cut(s) 269, 548
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 4 cut(s) 270, 271, 549, 550
PspPI GGNCC 3 cut(s) 70, 269, 548
PspPPI RGGWCCY 2 cut(s) 269, 548
PstI CTGCAG 1 cut(s) 368
PsuI RGATCY 3 cut(s) 107, 360, 419
RsaI GTAC 3 cut(s) 7, 254, 533
RsaNI GTAC 3 cut(s) 6, 253, 532
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 3 cut(s) 39, 262, 318
Sau3AI GATC 3 cut(s) 107, 360, 419
Sau96I GGNCC 3 cut(s) 70, 269, 548
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 4 cut(s) 242, 382, 438, 521
SetI ASST 9 cut(s) 143, 156, 171, 193, 263, 334, 371, 417, 537
SfaNI GCATC 2 cut(s) 124, 483
SfcI CTRYAG 1 cut(s) 364
SinI GGWCC 3 cut(s) 70, 269, 548
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
SseBI AGGCCT 1 cut(s) 341
StuI AGGCCT 1 cut(s) 341
StyI CCWWGG 2 cut(s) 73, 355
TaaI ACNGT 1 cut(s) 247
TatI WGTACW 2 cut(s) 5, 252
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseI GCWGC 3 cut(s) 38, 261, 317
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 256
VpaK11BI GGWCC 3 cut(s) 70, 269, 548
XceI RCATGY 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.