AT4G10270

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000303
Physical Location & Seq
Forward (+)
6374734 .. 6375210
477 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10270.1

Sequence Viewer

Length: 273 bp
ATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGCATTAAAAGACCAACTAGGTCTTTGTCGGTGGAACTACATACTCCGGTCGGTTAATCAACATCTCCGGAACAACGTTAGATCTGTTTCTCAAGGGAAAAGGTTCTCTTCGTCTTCTGTCTCCGCAGCCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCTCTTAGAACAGTCATGTACTTGAGCTGTTGGGGTCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

90

Amino Acids

9.82

Weight (kDa)

9.83

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 89 1.6e-34 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 1 cut(s) 177
AclI AACGTT 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 248
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 32, 167
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 53
BglII AGATCT 1 cut(s) 134
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 46, 264
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 129, 271
BsaWI WCCGGW 2 cut(s) 99, 120
BseAI TCCGGA 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 100, 121
BsmAI GTCTC 1 cut(s) 178
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 46, 264
BssMI GATC 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 28, 241
Bst6I CTCTTC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 213, 233
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 134
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 53, 218
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 33, 39
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 21, 244
CviJI RGCY 5 cut(s) 47, 182, 212, 221, 255
CviKI_1 RGCY 5 cut(s) 47, 182, 212, 221, 255
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 213, 233
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 263
FaeI CATG 2 cut(s) 24, 247
FaiI YATR 3 cut(s) 22, 95, 245
FalI AAGNNNNNCTT 4 cut(s) 145, 177, 216, 248
FatI CATG 2 cut(s) 20, 243
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 180
HapII CCGG 2 cut(s) 100, 121
Hin1II CATG 2 cut(s) 24, 247
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 100, 121
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 202, 211
HpyCH4III ACNGT 2 cut(s) 28, 241
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 218
HpyF3I CTNAG 2 cut(s) 213, 233
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 24, 247
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 113, 134, 180
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 3 cut(s) 153, 159, 236
MflI RGATCY 1 cut(s) 134
MluCI AATT 1 cut(s) 268
MnlI CCTC 3 cut(s) 46, 199, 202
MroI TCCGGA 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 3 cut(s) 59, 108, 271
MspI CCGG 2 cut(s) 100, 121
MwoI GCNNNNNNNGC 2 cut(s) 53, 218
NdeII GATC 1 cut(s) 134
NlaIII CATG 2 cut(s) 24, 247
NlaIV GGNNCC 2 cut(s) 46, 264
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 46, 264
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 3 cut(s) 59, 108, 271
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 263
SetI ASST 5 cut(s) 76, 132, 158, 191, 257
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 144, 250
SmoI CTYRAG 2 cut(s) 144, 250
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 28, 241
TaiI ACGT 1 cut(s) 132
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 59, 108, 271
Tru9I TTAA 3 cut(s) 59, 108, 271
TscAI CASTG 2 cut(s) 33, 39
TseI GCWGC 1 cut(s) 179
TspRI CASTG 2 cut(s) 33, 39
VpaK11BI GGWCC 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.