Rorug02G0490200

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000303
Physical Location & Seq
Forward (+)
61923522 .. 61923806
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0490200.1

Sequence Viewer

Length: 285 bp
ATGCTGGTGGTCGGTGATTACGATGGGGTTGGATCGGTGGAGACAGTTCCGTTATGGAAGATGGAGATCTGGATGGTGGTCAAGGGATTACCGGTGGCCCTTCGAAACAAGGCAGCCCTGAATCTGATAGGGTCTGCTATTGGTCAGGTAATCCGATTTGATCAATCGGCACTTCGAGGAAGGAGAAGGAACAGAGAATCAGGCTGGTATTGGATATCCGTCGTAGGGTTCGTACTTGGATGCTTTTTGAGTTCTCTCCCACGGTGCAACCTGAGATCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

10.17

Isoelectric Point (pI)

63.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 40
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 40
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 113
AsiGI ACCGGT 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 103
BbvI GCAGC 1 cut(s) 125
BccI CCATC 3 cut(s) 17, 55, 67
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 35
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 78, 245
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 91
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 103
Bsp143I GATC 4 cut(s) 32, 66, 160, 275
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 264
BspPI GGATC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 4 cut(s) 32, 66, 160, 275
Bst4CI ACNGT 2 cut(s) 46, 264
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 2 cut(s) 78, 245
BstKTI GATC 4 cut(s) 35, 69, 163, 278
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 4 cut(s) 32, 66, 160, 275
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 260
BtsCI GGATG 2 cut(s) 78, 245
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 233
CspAI ACCGGT 1 cut(s) 91
CviJI RGCY 3 cut(s) 98, 116, 204
CviKI_1 RGCY 3 cut(s) 98, 116, 204
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 272
DpnI GATC 4 cut(s) 34, 68, 162, 277
DpnII GATC 4 cut(s) 32, 66, 160, 275
Eco32I GATATC 1 cut(s) 216
EcoRV GATATC 1 cut(s) 216
FaiI YATR 1 cut(s) 55
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 85, 252
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 92
HinfI GANTC 2 cut(s) 121, 197
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 126, 155, 284
Hpy188III TCNNGA 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 3 cut(s) 110, 174, 180
HpyCH4III ACNGT 2 cut(s) 46, 264
HpyCH4V TGCA 1 cut(s) 267
HpyF3I CTNAG 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 32, 66, 160, 275
LpnPI CCDG 6 cut(s) 55, 105, 131, 131, 186, 190
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 230
MalI GATC 4 cut(s) 34, 68, 162, 277
MboI GATC 4 cut(s) 32, 66, 160, 275
MboII GAAGA 1 cut(s) 70
MflI RGATCY 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 1 cut(s) 170
MspI CCGG 1 cut(s) 92
NdeII GATC 4 cut(s) 32, 66, 160, 275
NspV TTCGAA 1 cut(s) 103
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 228
PfeI GAWTC 2 cut(s) 121, 197
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 32, 66, 160, 275
Sau96I GGNCC 1 cut(s) 97
SetI ASST 2 cut(s) 150, 273
SfaNI GCATC 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 103
TaaI ACNGT 2 cut(s) 46, 264
TaqI TCGA 2 cut(s) 103, 175
TfiI GAWTC 2 cut(s) 121, 197
TseI GCWGC 1 cut(s) 113
TspGWI ACGGA 2 cut(s) 39, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.