Rh2CG540300

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000303
Physical Location & Seq
Forward (+)
71709094 .. 71709381
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG540300.1

Sequence Viewer

Length: 288 bp
ATGAGTTCTTCATGGTCAGTAGCAAACAGGGCTTGGGTAGTAGCGGCAAGTGTTGGAGTTGTGGAGGCCTTGCAAAAAGACCAATTAGGGATCTGTAAGTGGAGCCAAACTATGAGATTGATGCAGCAACATGCCAAGACCCACCTCAGGTCTTATTCTCAGGCTTGCACCAAACTCTCTTCCTCATACTCGGTTTTGTTTTCAAGGAAACTCAGAGATGACGAGCCAAAGCAGTCCGAGGACTCTCTTAGGAAAGTCATGTACCTCCACACTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

95

Amino Acids

10.85

Weight (kDa)

9.69

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 14 - 94 4.2e-25 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 98
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 147, 274
AgsI TTSAA 1 cut(s) 204
AlwI GGATC 1 cut(s) 98
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 278
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 146
BbvI GCAGC 1 cut(s) 136
BisI GCNGC 2 cut(s) 45, 125
BlsI GCNGC 2 cut(s) 46, 126
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 3 cut(s) 104, 279, 280
BmsI GCATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 274
Bse21I CCTNAGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 147, 274
BseMII CTCAG 3 cut(s) 160, 173, 226
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 147, 274
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 3 cut(s) 159, 172, 225
BspLI GGNNCC 3 cut(s) 104, 279, 280
BspPI GGATC 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 4 cut(s) 146, 159, 212, 248
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 146
BsuRI GGCC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 12, 131, 259
CviJI RGCY 5 cut(s) 32, 68, 105, 164, 226
CviKI_1 RGCY 5 cut(s) 32, 68, 105, 164, 226
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 4 cut(s) 146, 159, 212, 248
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 278
Eco81I CCTNAGG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 278
FaeI CATG 3 cut(s) 15, 134, 262
FaiI YATR 5 cut(s) 13, 113, 132, 187, 260
FaqI GGGAC 1 cut(s) 264
FatI CATG 3 cut(s) 11, 130, 258
Fnu4HI GCNGC 2 cut(s) 45, 125
Fsp4HI GCNGC 2 cut(s) 45, 125
GluI GCNGC 2 cut(s) 45, 125
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 3 cut(s) 15, 134, 262
HinfI GANTC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 215, 238
HpyCH4V TGCA 3 cut(s) 73, 124, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 4 cut(s) 146, 159, 212, 248
Hsp92II CATG 3 cut(s) 15, 134, 262
KflI GGGWCCC 1 cut(s) 278
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 13, 133, 146
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 111
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 171
MflI RGATCY 1 cut(s) 90
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 5 cut(s) 58, 155, 193, 232, 275
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 90
NlaIII CATG 3 cut(s) 15, 134, 262
NlaIV GGNNCC 3 cut(s) 104, 279, 280
NspI RCATGY 1 cut(s) 134
PceI AGGCCT 1 cut(s) 68
PkrI GCNGC 2 cut(s) 46, 126
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 104, 279, 280
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SatI GCNGC 2 cut(s) 45, 125
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 236
SetI ASST 3 cut(s) 147, 152, 267
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 278
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 1 cut(s) 44
StuI AGGCCT 1 cut(s) 68
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 47
TseI GCWGC 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.