MD09G1097000.v1.1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000303
Physical Location & Seq
Reverse (-)
7053030 .. 7053374
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1097000.v1.1.491

Sequence Viewer

Length: 345 bp
ATGCTCATCTTCTTCATCGAACTCTTAAAACGTTCACAATCACTACTACAGAAGTTCAGAAGATCAAAGAGAGAAGAAATCATGAATTCAAGCAAGGCTATAGTGGCAGCAAGTGTTGGAGTTGTGGAGGCACTCAAGGACCAAGGGATTTGCAGATGGAACTCGACTTTGAGATATGTAGGTCAAAAAGCCAAGAGCCAAGTGAGGTCATTTTCTCAGGCCAACAACACGCTCTCTTCTCCTTCTGCTTCGGCTCTGAGTAAAGTGAGAGATGAGAAGCTCAAGAAGTCAGAGGAGTCTTTGAGGACAGTCATGTTTTTGAGCTGCTGGGGTCCCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

10.29

Isoelectric Point (pI)

72.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 35 - 112 8.5e-32 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 31
AcsI RAATTY 1 cut(s) 85
AgsI TTSAA 1 cut(s) 90
AluBI AGCT 2 cut(s) 280, 324
AluI AGCT 2 cut(s) 280, 324
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 107, 324
ApoI RAATTY 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 139, 332
AvaII GGWCC 2 cut(s) 139, 332
BbvI GCAGC 2 cut(s) 119, 311
BccI CCATC 1 cut(s) 150
BfmI CTRYAG 2 cut(s) 47, 99
BisI GCNGC 2 cut(s) 108, 325
BlsI GCNGC 2 cut(s) 109, 326
Bme18I GGWCC 2 cut(s) 139, 332
BmgT120I GGNCC 2 cut(s) 139, 332
BmiI GGNNCC 2 cut(s) 333, 334
BpuEI CTTGAG 2 cut(s) 119, 266
BsaJI CCNNGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 230, 248
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 119, 311
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 62
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 229, 249
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 333, 334
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 216, 257
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstSFI CTRYAG 2 cut(s) 47, 99
BstV1I GCAGC 2 cut(s) 119, 311
BsuRI GGCC 1 cut(s) 221
CciI TCATGA 1 cut(s) 81
Cfr13I GGNCC 2 cut(s) 139, 332
CviAII CATG 2 cut(s) 82, 313
CviJI RGCY 7 cut(s) 98, 191, 198, 221, 254, 280, 324
CviKI_1 RGCY 7 cut(s) 98, 191, 198, 221, 254, 280, 324
DdeI CTNAG 2 cut(s) 216, 257
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 139, 332
EcoO109I RGGNCCY 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 85, 316
FaiI YATR 4 cut(s) 83, 101, 177, 314
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 81, 312
Fnu4HI GCNGC 2 cut(s) 108, 325
Fsp4HI GCNGC 2 cut(s) 108, 325
GluI GCNGC 2 cut(s) 108, 325
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 221
Hin1II CATG 2 cut(s) 85, 316
HinfI GANTC 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 3 cut(s) 59, 258, 292
Hpy188III TCNNGA 2 cut(s) 82, 283
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 216, 257
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 85, 316
KflI GGGWCCC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 62
LpnPI CCDG 2 cut(s) 203, 313
Lsp1109I GCAGC 2 cut(s) 119, 311
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 4 cut(s) 4, 72, 86, 228
MluCI AATT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 4 cut(s) 121, 198, 286, 297
MseI TTAA 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 62
NlaIII CATG 2 cut(s) 85, 316
NlaIV GGNNCC 2 cut(s) 333, 334
PagI TCATGA 1 cut(s) 81
PkrI GCNGC 2 cut(s) 109, 326
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 332
Psp1406I AACGTT 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 333, 334
PspPI GGNCC 2 cut(s) 139, 332
PspPPI RGGWCCY 1 cut(s) 332
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 108, 325
Sau3AI GATC 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 139, 332
SchI GAGTC 1 cut(s) 305
SetI ASST 5 cut(s) 34, 184, 209, 282, 326
SfcI CTRYAG 2 cut(s) 47, 99
SinI GGWCC 2 cut(s) 139, 332
SmlI CTYRAG 2 cut(s) 134, 281
SmoI CTYRAG 2 cut(s) 134, 281
Sse9I AATT 1 cut(s) 85
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 18, 164
TasI AATT 1 cut(s) 85
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 2 cut(s) 107, 324
TspDTI ATGAA 2 cut(s) 4, 98
VpaK11BI GGWCC 2 cut(s) 139, 332
XapI RAATTY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.