MD09G1096800.v1.1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000303
Physical Location & Seq
Reverse (-)
7039096 .. 7039368
273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1096800.v1.1.491

Sequence Viewer

Length: 273 bp
ATGAGTTCATCAAGTGCAAGCAAGGCTATAGTGGCAGCAAGTGTTGGAATTGTGGAGGCACTCAAGGACCAAGGGATTTGCAGATGGAACTCTGCTTTGAGATATGCTGGCCAACAAGCCAAGAGCCAAGTGAGGTCATTTTCTCAGGCCAACAGCAAGCTCTCTTCTCCTTCTTCCTCAGCTCTGAGTAAAGTGAGAGATGAGAAGATGAAGAAATCAGAGGAGTCTTTGAGGATAGTCATGTACCTCAGCTGCTGGGGTCCCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

91

Amino Acids

9.71

Weight (kDa)

9.86

Isoelectric Point (pI)

69.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 11 - 88 1.1e-31 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 109
AfaI GTAC 1 cut(s) 245
AluBI AGCT 3 cut(s) 160, 182, 252
AluI AGCT 3 cut(s) 160, 182, 252
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 2 cut(s) 109, 147
ApeKI GCWGC 2 cut(s) 35, 252
AspS9I GGNCC 2 cut(s) 67, 260
AvaII GGWCC 2 cut(s) 67, 260
BalI TGGCCA 1 cut(s) 111
BbvCI CCTCAGC 2 cut(s) 178, 248
BbvI GCAGC 2 cut(s) 47, 239
BccI CCATC 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 36, 253
BlsI GCNGC 2 cut(s) 37, 254
Bme18I GGWCC 2 cut(s) 67, 260
BmgT120I GGNCC 2 cut(s) 67, 260
BmiI GGNNCC 2 cut(s) 261, 262
Bpu10I CCTNAGC 2 cut(s) 178, 248
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 70
BseMII CTCAG 4 cut(s) 158, 176, 192, 262
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 47, 239
BseYI CCCAGC 1 cut(s) 255
BshFI GGCC 2 cut(s) 111, 149
BslFI GGGAC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 2 cut(s) 111, 149
BspANI GGCC 2 cut(s) 111, 149
BspCNI CTCAG 4 cut(s) 157, 177, 191, 261
BspLI GGNNCC 2 cut(s) 261, 262
BssECI CCNNGG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 169
BstC8I GCNNGC 3 cut(s) 19, 109, 158
BstDEI CTNAG 4 cut(s) 144, 178, 185, 248
BstMWI GCNNNNNNNGC 2 cut(s) 23, 32
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 47, 239
BsuRI GGCC 2 cut(s) 111, 149
Cac8I GCNNGC 3 cut(s) 19, 109, 158
CaiI CAGNNNCTG 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 67, 260
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 241
CviJI RGCY 8 cut(s) 26, 111, 119, 126, 149, 160, 182, 252
CviKI_1 RGCY 8 cut(s) 26, 111, 119, 126, 149, 160, 182, 252
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 4 cut(s) 144, 178, 185, 248
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 67, 260
EcoO109I RGGNCCY 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 29, 105, 242
FaqI GGGAC 1 cut(s) 246
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 36, 253
Fsp4HI GCNGC 2 cut(s) 36, 253
GluI GCNGC 2 cut(s) 36, 253
GsaI CCCAGC 1 cut(s) 259
HaeIII GGCC 2 cut(s) 111, 149
Hin1II CATG 1 cut(s) 244
HinfI GANTC 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 186, 220
HpyAV CCTTC 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 17, 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 32
HpyF3I CTNAG 4 cut(s) 144, 178, 185, 248
Hsp92II CATG 1 cut(s) 244
KflI GGGWCCC 1 cut(s) 260
LpnPI CCDG 3 cut(s) 93, 131, 241
Lsp1109I GCAGC 2 cut(s) 47, 239
MboII GAAGA 4 cut(s) 156, 165, 217, 223
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 6 cut(s) 49, 126, 187, 214, 225, 257
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 23, 32
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 261, 262
PkrI GCNGC 2 cut(s) 37, 254
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 261, 262
PspPI GGNCC 2 cut(s) 67, 260
PspPPI RGGWCCY 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 252
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SatI GCNGC 2 cut(s) 36, 253
Sau96I GGNCC 2 cut(s) 67, 260
SchI GAGTC 1 cut(s) 233
SetI ASST 5 cut(s) 137, 162, 184, 249, 254
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 2 cut(s) 67, 260
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 1 cut(s) 48
StyI CCWWGG 1 cut(s) 70
TasI AATT 1 cut(s) 48
TseI GCWGC 2 cut(s) 35, 252
TspDTI ATGAA 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 67, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.