pycom17g08250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
6152814 .. 6153335
522 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08250.1

Sequence Viewer

Length: 522 bp
ATGGATTTTTTCAAAGGAAAACCGTGTGCTTTTGCTTGGCCCTACCCAACAAGTTTGTCGCCTCTGTCAATGAGTGAGTGTGACCAGCTAAGTATACCACTGGCTTTATTCCCATGGTTTTTCCCACATTATATGGGCTTCCACTTTCCTCCTACATTCATGAACTTAGTTGAAGTGTCGCTCCATATAAAAGCAACACCCACTCACCATTTTCTTCATCAAATCAAAATTCAAACACACCAAACAATCATCAGTTTTCTTCACTTGCAACTTTCCATCAAGAGTTCTTTGTTAAAAATATATACAGATAGAAAATATGACTATTTCATCAGCAGCAGCAAGGAGAGGTGGGGAAGTGGCAGGAAGTGTTGGAGTTGTGGAGGCCTTGAAAGACCAGGGGATCTGAAGGTGGAATTATACTATGAGATTACTGCAGCAGCATGCCAAGAACCAACTTGGGTCGTTTTCTCAGGCCAACAAGTTCTCTTCCTCATCTTCTGCTTTGATCTCAATTCGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.03

Weight (kDa)

7.67

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 94
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 425
AgsI TTSAA 4 cut(s) 13, 173, 233, 389
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 1 cut(s) 408
AoxI GGCC 3 cut(s) 38, 382, 472
ApeKI GCWGC 4 cut(s) 333, 336, 434, 437
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 197
BbvI GCAGC 4 cut(s) 345, 348, 446, 449
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 4 cut(s) 334, 337, 435, 438
BlsI GCNGC 4 cut(s) 335, 338, 436, 439
Bme1390I CCNGG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 113, 395
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 113, 395
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 345, 348, 446, 449
BshFI GGCC 3 cut(s) 40, 384, 474
BsnI GGCC 3 cut(s) 40, 384, 474
Bsp143I GATC 2 cut(s) 400, 505
Bsp19I CCATGG 1 cut(s) 113
BspANI GGCC 3 cut(s) 40, 384, 474
BspCNI CTCAG 1 cut(s) 482
BspHI TCATGA 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 436
BspPI GGATC 1 cut(s) 408
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 113, 395
BssMI GATC 2 cut(s) 400, 505
BssNAI GTATAC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 3 cut(s) 89, 166, 469
BstDSI CCRYGG 1 cut(s) 113
BstKTI GATC 2 cut(s) 403, 508
BstMBI GATC 2 cut(s) 400, 505
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 4 cut(s) 345, 348, 446, 449
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BstZ17I GTATAC 1 cut(s) 95
BsuRI GGCC 3 cut(s) 40, 384, 474
BtgI CCRYGG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 3 cut(s) 114, 160, 441
CviJI RGCY 6 cut(s) 40, 88, 104, 138, 384, 474
CviKI_1 RGCY 6 cut(s) 40, 88, 104, 138, 384, 474
DdeI CTNAG 3 cut(s) 89, 166, 469
DpnI GATC 2 cut(s) 402, 507
DpnII GATC 2 cut(s) 400, 505
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 117, 163, 444
FatI CATG 3 cut(s) 113, 159, 440
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 4 cut(s) 334, 337, 435, 438
Fsp4HI GCNGC 4 cut(s) 334, 337, 435, 438
GluI GCNGC 4 cut(s) 334, 337, 435, 438
HaeIII GGCC 3 cut(s) 40, 384, 474
Hin1II CATG 3 cut(s) 117, 163, 444
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 2 cut(s) 160, 280
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4V TGCA 2 cut(s) 268, 434
HpyF3I CTNAG 3 cut(s) 89, 166, 469
Hsp92II CATG 3 cut(s) 117, 163, 444
Kzo9I GATC 2 cut(s) 400, 505
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 6 cut(s) 86, 98, 346, 381, 408, 456
Lsp1109I GCAGC 4 cut(s) 345, 348, 446, 449
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 402, 507
MboI GATC 2 cut(s) 400, 505
MboII GAAGA 4 cut(s) 206, 251, 478, 487
MflI RGATCY 1 cut(s) 400
MluCI AATT 3 cut(s) 228, 413, 511
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 5 cut(s) 72, 159, 339, 374, 500
MseI TTAA 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
NcoI CCATGG 1 cut(s) 113
NdeII GATC 2 cut(s) 400, 505
NlaIII CATG 3 cut(s) 117, 163, 444
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 444
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 159
PceI AGGCCT 1 cut(s) 384
PkrI GCNGC 4 cut(s) 335, 338, 436, 439
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspPI GGNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 436
PsuI RGATCY 1 cut(s) 400
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 4 cut(s) 334, 337, 435, 438
Sau3AI GATC 2 cut(s) 400, 505
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 396
SetI ASST 3 cut(s) 90, 350, 411
SfcI CTRYAG 1 cut(s) 432
SphI GCATGC 1 cut(s) 444
Sse9I AATT 3 cut(s) 228, 413, 511
SseBI AGGCCT 1 cut(s) 384
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 515
TasI AATT 3 cut(s) 228, 413, 511
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 4 cut(s) 333, 336, 434, 437
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 148, 176, 206, 316
TspRI CASTG 1 cut(s) 105
XapI RAATTY 1 cut(s) 228
XceI RCATGY 1 cut(s) 444
XmiI GTMKAC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.