Rroxscaffold_2G00088830

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000303
Physical Location & Seq
Reverse (-)
10733157 .. 10734318
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088830.1

Sequence Viewer

Length: 258 bp
ATGTGTGCAACAAGAGAAGCTTTGATTGTGGCAGTGAGTCTTGGAGCTGTTCAGGCCATGAAAGATCAAGGCTTTTGCAGGTGGGGTTACACCATGAGGTCTGTTAACCAACATGCCAAGACCAATATGAGATCCTTCCTCCTGCAAGCCCAGAAGCTCCCTTCTTCGTTTTCTGCTGCGGTTTTCAACAAAATGAAGAATCAATCCGAGGAATCCCTAAGAAAAGTCATGTACCTGAGCTGTTGGGGTCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

85

Amino Acids

9.63

Weight (kDa)

9.78

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 84 4.4e-30 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 69
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 126
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 4 cut(s) 20, 47, 157, 240
AluI AGCT 4 cut(s) 20, 47, 157, 240
AlwI GGATC 1 cut(s) 126
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 56
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 64, 131
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 64, 131
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 218, 236
BstKTI GATC 2 cut(s) 67, 134
BstMBI GATC 2 cut(s) 64, 131
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 232
CviAII CATG 4 cut(s) 58, 94, 113, 229
CviJI RGCY 7 cut(s) 20, 47, 56, 72, 149, 157, 240
CviKI_1 RGCY 7 cut(s) 20, 47, 56, 72, 149, 157, 240
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 218, 236
DpnI GATC 2 cut(s) 66, 133
DpnII GATC 2 cut(s) 64, 131
Eco47I GGWCC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 248
FaeI CATG 4 cut(s) 61, 97, 116, 232
FaiI YATR 5 cut(s) 59, 95, 114, 128, 230
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 4 cut(s) 57, 93, 112, 228
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 4 cut(s) 61, 97, 116, 232
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 37, 199, 212
HpaI GTTAAC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 145, 171
HpyCH4V TGCA 3 cut(s) 8, 78, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 218, 236
Hsp92II CATG 4 cut(s) 61, 97, 116, 232
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 64, 131
LmnI GCTCC 2 cut(s) 44, 162
LpnPI CCDG 5 cut(s) 38, 64, 155, 164, 248
Lsp1109I GCAGC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 86
MalI GATC 2 cut(s) 66, 133
MboI GATC 2 cut(s) 64, 131
MboII GAAGA 2 cut(s) 156, 208
MflI RGATCY 1 cut(s) 131
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 90, 149, 202
MseI TTAA 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 64, 131
NlaIII CATG 4 cut(s) 61, 97, 116, 232
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 199, 212
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 64, 131
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 46
SetI ASST 7 cut(s) 22, 49, 83, 101, 159, 237, 242
SinI GGWCC 1 cut(s) 248
SsiI CCGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 199, 212
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 74, 209
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 248
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.