Rh2DG579100

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000303
Physical Location & Seq
Forward (+)
80955589 .. 80955945
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG579100.1

Sequence Viewer

Length: 357 bp
ATGACCACCTCATTCCGAAACCATTCAAACTCACCTGTGAGAAATTCCAAAACAGAGAAAATCATCGTCACCATCATGAGTACTAGTTCAAGAGCAAGCAAGGCCATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCATTGAAGGACCAAGGCATTTGCAGGTGGAACTCACCCACCATAAGATCCGTCCATCAACAAGCCAAGAACCATTTCAGGTCTTTTTCTCAGGCCAACAAGAACAAGCTATCTTCTTCTTCGACCTCAGCTTTGAGCAAAGTCAGGAATGAGAAGCACAAGAAGTCAGAGGAGTCTTTGAGGACTGTCATGTACTTGAGCTGCTGGGGTCCCAATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

118

Amino Acids

13.11

Weight (kDa)

10.63

Isoelectric Point (pI)

64.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 37 - 116 1.2e-33 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 2 cut(s) 82, 329
AgsI TTSAA 3 cut(s) 27, 90, 142
AhlI ACTAGT 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 3 cut(s) 244, 266, 336
AluI AGCT 3 cut(s) 244, 266, 336
AlwI GGATC 1 cut(s) 177
AoxI GGCC 2 cut(s) 102, 228
ApeKI GCWGC 2 cut(s) 113, 336
ApoI RAATTY 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
Asp700I GAANNNNTTC 2 cut(s) 22, 209
AspS9I GGNCC 2 cut(s) 145, 344
AsuHPI GGTGA 3 cut(s) 24, 61, 162
AvaII GGWCC 2 cut(s) 145, 344
BbvCI CCTCAGC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 125, 323
BccI CCATC 2 cut(s) 80, 198
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 84, 355
BfuAI ACCTGC 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 2 cut(s) 114, 337
BlsI GCNGC 2 cut(s) 115, 338
BmcAI AGTACT 1 cut(s) 82
Bme18I GGWCC 2 cut(s) 145, 344
BmgT120I GGNCC 2 cut(s) 145, 344
BmiI GGNNCC 2 cut(s) 345, 346
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 239, 276
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 125, 323
BseYI CCCAGC 1 cut(s) 339
BshFI GGCC 2 cut(s) 104, 230
BslFI GGGAC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 2 cut(s) 104, 230
Bsp143I GATC 1 cut(s) 182
BspANI GGCC 2 cut(s) 104, 230
BspCNI CTCAG 2 cut(s) 238, 275
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 345, 346
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 2 cut(s) 225, 262
BstKTI GATC 1 cut(s) 185
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 101, 110
BstV1I GCAGC 2 cut(s) 125, 323
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 2 cut(s) 104, 230
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 145, 344
Csp6I GTAC 2 cut(s) 81, 328
CviAII CATG 2 cut(s) 76, 325
CviJI RGCY 6 cut(s) 104, 200, 230, 244, 266, 336
CviKI_1 RGCY 6 cut(s) 104, 200, 230, 244, 266, 336
CviQI GTAC 2 cut(s) 81, 328
DdeI CTNAG 2 cut(s) 225, 262
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 145, 344
EcoO109I RGGNCCY 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 79, 328
FaiI YATR 3 cut(s) 77, 179, 326
FaqI GGGAC 1 cut(s) 330
FatI CATG 2 cut(s) 75, 324
Fnu4HI GCNGC 2 cut(s) 114, 337
Fsp4HI GCNGC 2 cut(s) 114, 337
FspBI CTAG 2 cut(s) 84, 355
GluI GCNGC 2 cut(s) 114, 337
GsaI CCCAGC 1 cut(s) 343
HaeIII GGCC 2 cut(s) 104, 230
Hin1II CATG 2 cut(s) 79, 328
HinfI GANTC 1 cut(s) 308
HphI GGTGA 3 cut(s) 24, 61, 162
Hpy188I TCNGA 2 cut(s) 17, 304
Hpy188III TCNNGA 3 cut(s) 76, 90, 280
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 110
HpyF3I CTNAG 2 cut(s) 225, 262
Hsp92II CATG 2 cut(s) 79, 328
KflI GGGWCCC 1 cut(s) 344
Kzo9I GATC 1 cut(s) 182
LpnPI CCDG 6 cut(s) 48, 145, 199, 212, 265, 325
Lsp1109I GCAGC 2 cut(s) 125, 323
MaeI CTAG 2 cut(s) 84, 355
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 3 cut(s) 240, 243, 246
MflI RGATCY 1 cut(s) 182
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 5 cut(s) 19, 127, 271, 298, 309
MroXI GAANNNNTTC 2 cut(s) 22, 209
MslI CAYNNNNRTG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 101, 110
NdeII GATC 1 cut(s) 182
NlaIII CATG 2 cut(s) 79, 328
NlaIV GGNNCC 2 cut(s) 345, 346
NmuCI GTSAC 1 cut(s) 67
PagI TCATGA 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 150
PdmI GAANNNNTTC 2 cut(s) 22, 209
PkrI GCNGC 2 cut(s) 115, 338
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 345, 346
PspPI GGNCC 2 cut(s) 145, 344
PspPPI RGGWCCY 1 cut(s) 344
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 2 cut(s) 82, 329
RsaNI GTAC 2 cut(s) 81, 328
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 2 cut(s) 114, 337
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 2 cut(s) 145, 344
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 317
SetI ASST 8 cut(s) 11, 37, 164, 218, 246, 263, 268, 338
SinI GGWCC 2 cut(s) 145, 344
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 1 cut(s) 43
SspMI CTAG 2 cut(s) 84, 355
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 43
TatI WGTACW 2 cut(s) 80, 327
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 113, 336
Tsp45I GTSAC 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 145, 344
XapI RAATTY 1 cut(s) 43
XmnI GAANNNNTTC 2 cut(s) 22, 209
XspI CTAG 2 cut(s) 84, 355
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.