Rh2DG578700

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000303
Physical Location & Seq
Forward (+)
80921173 .. 80936140
14968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG578700.1

Sequence Viewer

Length: 549 bp
ATGAGTACTGCTTCAAGAACAAGCAAGGCTATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCATTGAAGGACCAAGGGATTTGCAGGTGGAACTCACCCACCATAAGATCCGTCCATCAACAGGCCAAGAACCATTTCAGGTCTTCTTCTCAGGCGAACAAGAACAAGCTCTCTTCTTCTTCAACCTCAGCTTTCAGCAGAGTCAGAGACGAGAAGCTGAAGAAGTCGGAGGAGTCTTTGAGGACGATCAAGATCATCAACAATATGAGTTCTTCATCATCAGTAGCAAACAGGGCTTGGGTAGTTGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAAGAGACCAAGGGATCTGCAGGTGGAGTCAAACAATGAGATTGGCGCAACAACATGCCAAGACTCACCTCAGATCTTTTTCTCAGGCGAACCGGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGAAAACTGAGAGATGACAAGCCGAAGCAGTCTGAGGAATCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

182

Amino Acids

20.33

Weight (kDa)

10.99

Isoelectric Point (pI)

66.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 83 8e-23 Wound-induced protein
DUF3774 PF12609 102 - 181 2.8e-26 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 75, 348
Acc36I ACCTGC 2 cut(s) 75, 348
AclWI GGATC 2 cut(s) 102, 359
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 7, 524
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 5 cut(s) 15, 67, 183, 337, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 169, 191, 217
AluI AGCT 3 cut(s) 169, 191, 217
Alw26I GTCTC 3 cut(s) 201, 336, 427
AlwI GGATC 2 cut(s) 102, 359
AoxI GGCC 2 cut(s) 123, 330
ApeKI GCWGC 2 cut(s) 38, 308
Asp700I GAANNNNTTC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 70, 539
AsuHPI GGTGA 2 cut(s) 87, 395
AvaII GGWCC 2 cut(s) 70, 539
BbsI GAAGAC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 50, 320
BccI CCATC 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 201, 336, 427
BfmI CTRYAG 1 cut(s) 355
BfuAI ACCTGC 2 cut(s) 75, 348
BglII AGATCT 1 cut(s) 410
BisI GCNGC 2 cut(s) 39, 309
BlsI GCNGC 2 cut(s) 40, 310
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 70, 539
BmgT120I GGNCC 2 cut(s) 70, 539
BmiI GGNNCC 2 cut(s) 540, 541
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 73, 346
BsaWI WCCGGW 1 cut(s) 429
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 73, 346
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 6 cut(s) 164, 201, 421, 434, 464, 489
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 50, 320
BshFI GGCC 2 cut(s) 125, 332
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 3 cut(s) 201, 336, 427
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 2 cut(s) 125, 332
Bso31I GGTCTC 1 cut(s) 336
Bsp143I GATC 5 cut(s) 107, 246, 252, 351, 410
BspANI GGCC 2 cut(s) 125, 332
BspCNI CTCAG 6 cut(s) 163, 200, 420, 433, 465, 490
BspLI GGNNCC 2 cut(s) 540, 541
BspMAI CTGCAG 1 cut(s) 359
BspMI ACCTGC 2 cut(s) 75, 348
BspPI GGATC 2 cut(s) 102, 359
BspTNI GGTCTC 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 73, 346
BssMI GATC 5 cut(s) 107, 246, 252, 351, 410
BssT1I CCWWGG 2 cut(s) 73, 346
Bst6I CTCTTC 2 cut(s) 178, 445
BstDEI CTNAG 6 cut(s) 150, 187, 407, 420, 473, 498
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 5 cut(s) 110, 249, 255, 354, 413
BstMAI GTCTC 3 cut(s) 201, 336, 427
BstMBI GATC 5 cut(s) 107, 246, 252, 351, 410
BstMWI GCNNNNNNNGC 2 cut(s) 35, 293
BstNSI RCATGY 1 cut(s) 395
BstSFI CTRYAG 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 50, 320
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 3 cut(s) 107, 351, 410
BstYI RGATCY 3 cut(s) 107, 351, 410
BsuRI GGCC 2 cut(s) 125, 332
BveI ACCTGC 2 cut(s) 75, 348
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 70, 539
Csp6I GTAC 2 cut(s) 6, 523
CviAII CATG 2 cut(s) 392, 520
CviJI RGCY 8 cut(s) 29, 125, 169, 191, 217, 296, 332, 487
CviKI_1 RGCY 8 cut(s) 29, 125, 169, 191, 217, 296, 332, 487
CviQI GTAC 2 cut(s) 6, 523
DdeI CTNAG 6 cut(s) 150, 187, 407, 420, 473, 498
DpnI GATC 5 cut(s) 109, 248, 254, 353, 412
DpnII GATC 5 cut(s) 107, 246, 252, 351, 410
Eam1104I CTCTTC 2 cut(s) 178, 445
EarI CTCTTC 2 cut(s) 178, 445
Eco130I CCWWGG 2 cut(s) 73, 346
Eco147I AGGCCT 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 70, 539
Eco57I CTGAAG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 539
EcoT14I CCWWGG 2 cut(s) 73, 346
ErhI CCWWGG 2 cut(s) 73, 346
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 2 cut(s) 395, 523
FaiI YATR 6 cut(s) 104, 266, 393, 448, 509, 521
FaqI GGGAC 1 cut(s) 525
FatI CATG 2 cut(s) 391, 519
Fnu4HI GCNGC 2 cut(s) 39, 309
Fsp4HI GCNGC 2 cut(s) 39, 309
GlaI GCGC 1 cut(s) 384
GluI GCNGC 2 cut(s) 39, 309
HaeIII GGCC 2 cut(s) 125, 332
HapII CCGG 1 cut(s) 430
HhaI GCGC 1 cut(s) 385
Hin1II CATG 2 cut(s) 395, 523
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 6 cut(s) 201, 233, 364, 400, 435, 503
HpaII CCGG 1 cut(s) 430
HphI GGTGA 2 cut(s) 87, 395
Hpy188I TCNGA 4 cut(s) 206, 229, 410, 499
Hpy188III TCNNGA 3 cut(s) 15, 250, 465
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 84, 308, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 293
HpyF3I CTNAG 6 cut(s) 150, 187, 407, 420, 473, 498
Hsp92II CATG 2 cut(s) 395, 523
HspAI GCGC 1 cut(s) 383
KflI GGGWCCC 1 cut(s) 539
Kzo9I GATC 5 cut(s) 107, 246, 252, 351, 410
LpnPI CCDG 8 cut(s) 70, 107, 124, 137, 277, 343, 407, 443
Lsp1109I GCAGC 2 cut(s) 50, 320
MalI GATC 5 cut(s) 109, 248, 254, 353, 412
MboI GATC 5 cut(s) 107, 246, 252, 351, 410
MboII GAAGA 8 cut(s) 135, 138, 165, 168, 171, 232, 264, 432
MflI RGATCY 3 cut(s) 107, 351, 410
MlyI GAGTC 5 cut(s) 210, 242, 373, 394, 429
MmeI TCCRAC 2 cut(s) 28, 207
MroXI GAANNNNTTC 1 cut(s) 134
MspI CCGG 1 cut(s) 430
MwoI GCNNNNNNNGC 2 cut(s) 35, 293
NdeII GATC 5 cut(s) 107, 246, 252, 351, 410
NlaIII CATG 2 cut(s) 395, 523
NlaIV GGNNCC 2 cut(s) 540, 541
NspI RCATGY 1 cut(s) 395
PaqCI CACCTGC 2 cut(s) 75, 348
PceI AGGCCT 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 2 cut(s) 40, 310
PleI GAGTC 5 cut(s) 209, 241, 372, 394, 429
PpsI GAGTC 5 cut(s) 209, 241, 372, 394, 429
PpuMI RGGWCCY 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 540, 541
PspPI GGNCC 2 cut(s) 70, 539
PspPPI RGGWCCY 1 cut(s) 539
PstI CTGCAG 1 cut(s) 359
PsuI RGATCY 3 cut(s) 107, 351, 410
RsaI GTAC 2 cut(s) 7, 524
RsaNI GTAC 2 cut(s) 6, 523
SatI GCNGC 2 cut(s) 39, 309
Sau3AI GATC 5 cut(s) 107, 246, 252, 351, 410
Sau96I GGNCC 2 cut(s) 70, 539
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 5 cut(s) 210, 242, 373, 394, 429
SetI ASST 9 cut(s) 89, 143, 171, 188, 193, 219, 362, 408, 528
SfcI CTRYAG 1 cut(s) 355
SinI GGWCC 2 cut(s) 70, 539
SseBI AGGCCT 1 cut(s) 332
StuI AGGCCT 1 cut(s) 332
StyI CCWWGG 2 cut(s) 73, 346
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 1 cut(s) 503
TseI GCWGC 2 cut(s) 38, 308
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 70, 539
XceI RCATGY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.