RLG00000021289

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000303
Physical Location & Seq
Forward (+)
73819000 .. 73821900
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021289

Sequence Viewer

Length: 741 bp
ATGAGTACTAGTTCAAAAGCAAGCAAGGCCATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCATTGAAGGACCAAGGCATTTGCAGGTGGAACTCACCCACCATAAGATCCGCCCATCAACAAGCCAAGAACCATTTCAGGTCTTTTTCTCAGGCCAACAAGAGCAAGCTATCTTCTTCTTCGACCTCAGCTTTGAGCAAAGTCAGGAATGAGAAGCATGAGAAGTCAGAGGAGTCTTTGAGGACTGTCATAACATACAAGAACATCACACTTCTGATTCCATTAGAAGATCAAGATCATCAACAATATGAGTTCTTCATGGTCAGTAGCAAACAGGGCTTGGGTAGTGGCGGCAAGTGTTGGAGTTGTGGGGGCCTTGCAAAAAGACCAATCAGGGATCTCACATTCAAACAGCAGTTTCAGTGTTCATCATCAGCAGTTTCAGTGTTCATCATCTACAATATGAGTTCTTCATCATCAGCAAGGAGAGCATGGATAGTGGCAGCAAGTGTGGGAGTTGTGGAGGTCTTGAAAGACCAAGGAATCTGCAGGTGGAATTACACAATGAAATTGATGCAGCAGCAAGCCAAGACCCATCTCAGGTCTTATTCTCAGGCTCATTCAAAACTCTCTTCCTCATCCTCTGCTTTGGTCTCAAGTAAACTCAGAGATGACCGGGCCAAGCACTCTGAGGAGTCTCTTAGAAAAGTCATGTACCTCAGCTGCTGGGGTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

247

Amino Acids

27.32

Weight (kDa)

9.88

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 84 3.5e-23 Wound-induced protein
DUF3774 PF12609 167 - 245 1.4e-31 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 75, 540
Acc36I ACCTGC 2 cut(s) 75, 540
AciI CCGC 2 cut(s) 111, 351
AclWI GGATC 2 cut(s) 102, 405
AfaI GTAC 2 cut(s) 7, 716
AfiI CCNNNNNNNGG 1 cut(s) 600
AgsI TTSAA 5 cut(s) 15, 67, 409, 532, 624
AhlI ACTAGT 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 169, 191, 723
AluI AGCT 3 cut(s) 169, 191, 723
Alw26I GTCTC 2 cut(s) 658, 702
AlwI GGATC 2 cut(s) 102, 405
AlwNI CAGNNNCTG 1 cut(s) 726
AoxI GGCC 4 cut(s) 27, 153, 373, 678
ApeKI GCWGC 5 cut(s) 38, 503, 577, 580, 723
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 4 cut(s) 70, 373, 678, 731
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 2 cut(s) 70, 731
BbvCI CCTCAGC 2 cut(s) 187, 719
BbvI GCAGC 5 cut(s) 50, 515, 589, 592, 710
BccI CCATC 2 cut(s) 123, 603
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 2 cut(s) 658, 702
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 547
BfuAI ACCTGC 2 cut(s) 75, 540
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 6 cut(s) 39, 352, 504, 578, 581, 724
BlsI GCNGC 6 cut(s) 40, 353, 505, 579, 582, 725
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 2 cut(s) 70, 731
BmgT120I GGNCC 4 cut(s) 70, 373, 678, 731
BmiI GGNNCC 3 cut(s) 374, 732, 733
BmrFI CCNGG 1 cut(s) 677
BmsI GCATC 1 cut(s) 564
Bpu10I CCTNAGC 2 cut(s) 187, 719
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 677
BsaBI GATNNNNATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 73, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 73, 538
BseGI GGATG 1 cut(s) 638
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMII CTCAG 7 cut(s) 164, 201, 613, 626, 679, 681, 733
BseRI GAGGAG 2 cut(s) 245, 707
BseXI GCAGC 5 cut(s) 50, 515, 589, 592, 710
BseYI CCCAGC 1 cut(s) 726
BshFI GGCC 4 cut(s) 29, 155, 375, 680
BsiSI CCGG 1 cut(s) 676
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 2 cut(s) 658, 702
BsmFI GGGAC 1 cut(s) 717
BsnI GGCC 4 cut(s) 29, 155, 375, 680
Bso31I GGTCTC 1 cut(s) 658
Bsp143I GATC 4 cut(s) 107, 289, 295, 397
BspACI CCGC 2 cut(s) 111, 351
BspANI GGCC 4 cut(s) 29, 155, 375, 680
BspCNI CTCAG 7 cut(s) 163, 200, 612, 625, 678, 682, 732
BspLI GGNNCC 3 cut(s) 374, 732, 733
BspMAI CTGCAG 1 cut(s) 551
BspMI ACCTGC 2 cut(s) 75, 540
BspPI GGATC 2 cut(s) 102, 405
BspTNI GGTCTC 1 cut(s) 658
BssECI CCNNGG 2 cut(s) 73, 538
BssMI GATC 4 cut(s) 107, 289, 295, 397
BssT1I CCWWGG 2 cut(s) 73, 538
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 637
BstC8I GCNNGC 3 cut(s) 22, 167, 585
BstDEI CTNAG 8 cut(s) 150, 187, 599, 612, 665, 690, 701, 719
BstF5I GGATG 1 cut(s) 638
BstKTI GATC 4 cut(s) 110, 292, 298, 400
BstMAI GTCTC 2 cut(s) 658, 702
BstMBI GATC 4 cut(s) 107, 289, 295, 397
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 336, 488
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 1 cut(s) 547
BstV1I GCAGC 5 cut(s) 50, 515, 589, 592, 710
BstX2I RGATCY 2 cut(s) 107, 397
BstYI RGATCY 2 cut(s) 107, 397
BsuRI GGCC 4 cut(s) 29, 155, 375, 680
BtsCI GGATG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 428, 450
BveI ACCTGC 2 cut(s) 75, 540
Cac8I GCNNGC 3 cut(s) 22, 167, 585
CaiI CAGNNNCTG 1 cut(s) 726
Cfr13I GGNCC 4 cut(s) 70, 373, 678, 731
Csp6I GTAC 2 cut(s) 6, 715
CviAII CATG 4 cut(s) 218, 319, 492, 712
CviQI GTAC 2 cut(s) 6, 715
DdeI CTNAG 8 cut(s) 150, 187, 599, 612, 665, 690, 701, 719
DpnI GATC 4 cut(s) 109, 291, 297, 399
DpnII GATC 4 cut(s) 107, 289, 295, 397
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 73, 538
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 2 cut(s) 70, 731
EcoO109I RGGNCCY 2 cut(s) 373, 731
EcoT14I CCWWGG 2 cut(s) 73, 538
ErhI CCWWGG 2 cut(s) 73, 538
FaeI CATG 4 cut(s) 221, 322, 495, 715
FaiI YATR 9 cut(s) 104, 219, 251, 256, 309, 320, 464, 493, 713
FaqI GGGAC 1 cut(s) 717
FatI CATG 4 cut(s) 217, 318, 491, 711
Fnu4HI GCNGC 6 cut(s) 39, 352, 504, 578, 581, 724
FokI GGATG 1 cut(s) 625
Fsp4HI GCNGC 6 cut(s) 39, 352, 504, 578, 581, 724
FspBI CTAG 1 cut(s) 9
GluI GCNGC 6 cut(s) 39, 352, 504, 578, 581, 724
GsaI CCCAGC 1 cut(s) 730
HaeIII GGCC 4 cut(s) 29, 155, 375, 680
HapII CCGG 1 cut(s) 676
Hin1II CATG 4 cut(s) 221, 322, 495, 715
HinfI GANTC 4 cut(s) 233, 277, 543, 695
HpaII CCGG 1 cut(s) 676
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 662
Hpy188I TCNGA 4 cut(s) 229, 276, 668, 691
Hpy188III TCNNGA 3 cut(s) 205, 293, 529
Hpy8I GTNNAC 1 cut(s) 662
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 84, 380, 549, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 336, 488
HpyF3I CTNAG 8 cut(s) 150, 187, 599, 612, 665, 690, 701, 719
Hsp92II CATG 4 cut(s) 221, 322, 495, 715
KflI GGGWCCC 1 cut(s) 731
Kzo9I GATC 4 cut(s) 107, 289, 295, 397
Lsp1109I GCAGC 5 cut(s) 50, 515, 589, 592, 710
LweI GCATC 1 cut(s) 564
MaeI CTAG 1 cut(s) 9
MalI GATC 4 cut(s) 109, 291, 297, 399
MboI GATC 4 cut(s) 107, 289, 295, 397
MboII GAAGA 7 cut(s) 165, 168, 171, 299, 307, 462, 624
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 2 cut(s) 107, 397
MluCI AATT 3 cut(s) 556, 569, 736
MlyI GAGTC 2 cut(s) 242, 704
MmeI TCCRAC 2 cut(s) 28, 341
MnlI CCTC 9 cut(s) 52, 196, 223, 234, 517, 646, 652, 685, 728
MroXI GAANNNNTTC 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 677
MunI CAATTG 1 cut(s) 736
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 336, 488
NciI CCSGG 1 cut(s) 677
NdeII GATC 4 cut(s) 107, 289, 295, 397
NlaIII CATG 4 cut(s) 221, 322, 495, 715
NlaIV GGNNCC 3 cut(s) 374, 732, 733
PaqCI CACCTGC 2 cut(s) 75, 540
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 277, 543
PkrI GCNGC 6 cut(s) 40, 353, 505, 579, 582, 725
PleI GAGTC 2 cut(s) 241, 703
PpsI GAGTC 2 cut(s) 241, 703
PpuMI RGGWCCY 1 cut(s) 731
Psp5II RGGWCCY 1 cut(s) 731
PspFI CCCAGC 1 cut(s) 726
PspN4I GGNNCC 3 cut(s) 374, 732, 733
PspPI GGNCC 4 cut(s) 70, 373, 678, 731
PspPPI RGGWCCY 1 cut(s) 731
PstI CTGCAG 1 cut(s) 551
PstNI CAGNNNCTG 1 cut(s) 726
PsuI RGATCY 2 cut(s) 107, 397
PvuII CAGCTG 1 cut(s) 723
RsaI GTAC 2 cut(s) 7, 716
RsaNI GTAC 2 cut(s) 6, 715
SatI GCNGC 6 cut(s) 39, 352, 504, 578, 581, 724
Sau3AI GATC 4 cut(s) 107, 289, 295, 397
Sau96I GGNCC 4 cut(s) 70, 373, 678, 731
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 242, 704
ScrFI CCNGG 1 cut(s) 677
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 547
SinI GGWCC 2 cut(s) 70, 731
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 3 cut(s) 556, 569, 736
SsiI CCGC 2 cut(s) 111, 351
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 2 cut(s) 73, 538
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 182
TasI AATT 3 cut(s) 556, 569, 736
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 2 cut(s) 277, 543
TscAI CASTG 2 cut(s) 428, 450
TseI GCWGC 5 cut(s) 38, 503, 577, 580, 723
TspDTI ATGAA 5 cut(s) 307, 417, 439, 462, 581
TspRI CASTG 2 cut(s) 428, 450
VpaK11BI GGWCC 2 cut(s) 70, 731
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.