Rorug02G0490000

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000303
Physical Location & Seq
Reverse (-)
61910680 .. 61915530
4851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0490000.1

Sequence Viewer

Length: 1029 bp
ATGGCGGAGGTTGCTGACCCCAAAGATACTTCTCACACCACCAACACTACTCGTTCTAATTCCAATTCCGATCCAGATGAGAATCGTCTCGTCCGTGTCTACGCCGATGGGATCTACGATCTCTTCCACTTCGGCCATGCTCGCTCTCTTGAGCAAGCCAAGTTATCGTTCCCTAACACCTATTTGCTCGTTGGTGTTTGCAATGATGCTACCACTCACAAGTTTAAAGGGAAAACTGTTATGACGGAGTCCGAAAGATATGAATCTCTTCGCCATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCCTGGGTAGTCAATGAAGAATTTCTTGACAAGCATAATATTGACTATGTAGCCCATGACTCTCTCCCTTATGCTGATGCTAGTGGAGCTGGAAAGGATGTATACGAATTTGTCAAAGCCGTTGGCAGGTTTAAGGAGACAAAACGAACTGAGGGGATATCGACATCGGACATTATTATGAGGATTGTAAAAGATTATAACCAGTATGTGTTGCGTAACTTGGATCGTGGGTATACTAGAAAAGAGCTTGGCGTTAGTTTTGTGAAGGAAAAACGATTGAGGGTGAACATGAGGTTGAAAAAGTTACAGGAGAAAGTGAAGGAACATCAAGAAAAAGTAGGAGAAAAGATTCAGACTGTTGCTATGCATCGTAATGAATGGGTAGAAAATGCTGATCGCTGGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACTGCCATTAGAGATCGAATTCAGGAGCGCTTAAGAGGCCAGCAGTCGGCAGGTCTCCTGGAAAATGGTAAGGCGGTTACTGATGATGATGCTGAAGAATATTATGATGATGAAGATGAAGAATATTATGATGAGGAAGAATATTATGACGATGAAGAATATTATGAAGAGGTATACGGGAAAGACCCAAATAATGAGAAAGAGGGAAATGATAAAGGAAAGAGTGTGAAAGAAAAGGATGAGAAAGAAAATACCGACAAAGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

342

Amino Acids

39.88

Weight (kDa)

4.99

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 34 - 163 8e-32 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
Acc36I ACCTGC 2 cut(s) 426, 800
AccB7I CCANNNNNTGG 1 cut(s) 754
AccI GTMKAC 4 cut(s) 99, 411, 542, 933
AciI CCGC 2 cut(s) 5, 833
AclWI GGATC 3 cut(s) 65, 119, 540
AcoI YGGCCR 1 cut(s) 133
AcsI RAATTY 3 cut(s) 329, 416, 777
AcuI CTGAAG 1 cut(s) 873
AfeI AGCGCT 1 cut(s) 788
AfiI CCNNNNNNNGG 3 cut(s) 435, 754, 805
AflII CTTAAG 1 cut(s) 790
AgsI TTSAA 2 cut(s) 607, 737
AjnI CCWGG 2 cut(s) 311, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 398, 556
AluI AGCT 2 cut(s) 398, 556
Alw26I GTCTC 3 cut(s) 92, 440, 818
AlwI GGATC 3 cut(s) 65, 119, 540
Aor51HI AGCGCT 1 cut(s) 788
AoxI GGCC 2 cut(s) 133, 796
ApoI RAATTY 3 cut(s) 329, 416, 777
Asp700I GAANNNNTTC 4 cut(s) 267, 297, 330, 657
AspLEI GCGC 1 cut(s) 789
AsuHPI GGTGA 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 761
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 2 cut(s) 313, 818
BcoDI GTCTC 3 cut(s) 92, 440, 818
BfaI CTAG 2 cut(s) 390, 546
BfoI RGCGCY 1 cut(s) 790
BfrI CTTAAG 1 cut(s) 790
BfuAI ACCTGC 2 cut(s) 426, 800
Bme1390I CCNGG 2 cut(s) 313, 818
BmrFI CCNGG 2 cut(s) 313, 818
BmsI GCATC 5 cut(s) 196, 295, 376, 685, 838
BpuEI CTTGAG 2 cut(s) 170, 746
BsaBI GATNNNNATC 2 cut(s) 81, 262
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 311, 312
Bsc4I CCNNNNNNNGG 3 cut(s) 435, 754, 805
Bse1I ACTGG 1 cut(s) 511
Bse3DI GCAATG 2 cut(s) 208, 274
Bse8I GATNNNNATC 2 cut(s) 81, 262
BseBI CCWGG 2 cut(s) 313, 818
BseDI CCNNGG 2 cut(s) 311, 312
BseGI GGATG 3 cut(s) 295, 412, 1003
BseJI GATNNNNATC 2 cut(s) 81, 262
BseLI CCNNNNNNNGG 3 cut(s) 435, 754, 805
BseMI GCAATG 2 cut(s) 208, 274
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 511
BseSI GKGCMC 1 cut(s) 761
BseYI CCCAGC 1 cut(s) 708
BshFI GGCC 2 cut(s) 135, 798
BslI CCNNNNNNNGG 3 cut(s) 435, 754, 805
BsmAI GTCTC 3 cut(s) 92, 440, 818
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 135, 798
Bso31I GGTCTC 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 761
Bsp143I GATC 6 cut(s) 70, 111, 118, 532, 703, 772
BspACI CCGC 2 cut(s) 5, 833
BspANI GGCC 2 cut(s) 135, 798
BspCNI CTCAG 1 cut(s) 451
BspMI ACCTGC 2 cut(s) 426, 800
BspPI GGATC 3 cut(s) 65, 119, 540
BspTI CTTAAG 1 cut(s) 790
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 2 cut(s) 208, 274
BsrI ACTGG 1 cut(s) 511
BssECI CCNNGG 2 cut(s) 311, 312
BssMI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
BssNAI GTATAC 3 cut(s) 412, 543, 934
Bst1107I GTATAC 3 cut(s) 412, 543, 934
Bst2UI CCWGG 2 cut(s) 313, 818
Bst4CI ACNGT 2 cut(s) 238, 667
Bst6I CTCTTC 3 cut(s) 128, 273, 921
BstAFI CTTAAG 1 cut(s) 790
BstC8I GCNNGC 3 cut(s) 142, 156, 800
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 295, 412, 1003
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 6 cut(s) 73, 114, 121, 535, 706, 775
BstMAI GTCTC 3 cut(s) 92, 440, 818
BstMBI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
BstMWI GCNNNNNNNGC 4 cut(s) 11, 141, 395, 795
BstNI CCWGG 2 cut(s) 313, 818
BstSCI CCNGG 2 cut(s) 311, 816
BstSLI GKGCMC 1 cut(s) 761
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 3 cut(s) 412, 543, 934
BsuRI GGCC 2 cut(s) 135, 798
BtsCI GGATG 3 cut(s) 295, 412, 1003
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 2 cut(s) 426, 800
Cac8I GCNNGC 3 cut(s) 142, 156, 800
CfoI GCGC 1 cut(s) 789
CviAII CATG 3 cut(s) 137, 365, 598
CviJI RGCY 7 cut(s) 135, 158, 362, 398, 428, 556, 798
CviKI_1 RGCY 7 cut(s) 135, 158, 362, 398, 428, 556, 798
DdeI CTNAG 1 cut(s) 459
DpnI GATC 6 cut(s) 72, 113, 120, 534, 705, 774
DpnII GATC 6 cut(s) 70, 111, 118, 532, 703, 772
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 3 cut(s) 128, 273, 921
EarI CTCTTC 3 cut(s) 128, 273, 921
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 468
Eco47III AGCGCT 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 873
EcoRI GAATTC 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 311, 816
EcoRV GATATC 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 678
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 3 cut(s) 140, 368, 601
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 3 cut(s) 136, 364, 597
FblI GTMKAC 4 cut(s) 99, 411, 542, 933
FokI GGATG 3 cut(s) 302, 419, 1010
FspBI CTAG 2 cut(s) 390, 546
GlaI GCGC 1 cut(s) 788
GsaI CCCAGC 1 cut(s) 712
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 2 cut(s) 135, 798
HhaI GCGC 1 cut(s) 789
Hin1II CATG 3 cut(s) 140, 368, 601
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HinfI GANTC 5 cut(s) 82, 248, 263, 368, 658
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 5 cut(s) 100, 412, 543, 595, 934
Hpy188I TCNGA 4 cut(s) 70, 253, 478, 663
Hpy188III TCNNGA 7 cut(s) 74, 149, 302, 335, 638, 725, 782
Hpy8I GTNNAC 5 cut(s) 100, 412, 543, 595, 934
HpyAV CCTTC 3 cut(s) 568, 622, 734
HpyCH4III ACNGT 2 cut(s) 238, 667
HpyCH4V TGCA 4 cut(s) 201, 279, 308, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 141, 395, 795
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 3 cut(s) 140, 368, 601
HspAI GCGC 1 cut(s) 787
Kzo9I GATC 6 cut(s) 70, 111, 118, 532, 703, 772
LmnI GCTCC 2 cut(s) 395, 784
LweI GCATC 5 cut(s) 196, 295, 376, 685, 838
MaeI CTAG 2 cut(s) 390, 546
MaeIII GTNAC 3 cut(s) 524, 612, 835
MalI GATC 6 cut(s) 72, 113, 120, 534, 705, 774
MboI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 5 cut(s) 58, 64, 329, 416, 777
MlyI GAGTC 2 cut(s) 257, 362
MnlI CCTC 8 cut(s) 454, 483, 582, 594, 788, 886, 922, 955
Mph1103I ATGCAT 1 cut(s) 678
MroXI GAANNNNTTC 4 cut(s) 267, 297, 330, 657
MseI TTAA 3 cut(s) 225, 441, 791
MslI CAYNNNNRTG 2 cut(s) 485, 681
MspCI CTTAAG 1 cut(s) 790
MspR9I CCNGG 2 cut(s) 313, 818
MvaI CCWGG 2 cut(s) 313, 818
MwoI GCNNNNNNNGC 4 cut(s) 11, 141, 395, 795
NdeII GATC 6 cut(s) 70, 111, 118, 532, 703, 772
NlaIII CATG 3 cut(s) 140, 368, 601
NsiI ATGCAT 1 cut(s) 678
PasI CCCWGGG 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PdmI GAANNNNTTC 4 cut(s) 267, 297, 330, 657
PfeI GAWTC 3 cut(s) 82, 263, 658
PflFI GACNNNGTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 816
PleI GAGTC 2 cut(s) 256, 362
PpsI GAGTC 2 cut(s) 256, 362
PsiI TTATAA 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 311, 816
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 2 cut(s) 311, 816
PsuI RGATCY 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 485, 681
SaqAI TTAA 3 cut(s) 225, 441, 791
Sau3AI GATC 6 cut(s) 70, 111, 118, 532, 703, 772
SchI GAGTC 2 cut(s) 257, 362
ScrFI CCNGG 2 cut(s) 313, 818
SduI GDGCHC 1 cut(s) 761
SetI ASST 9 cut(s) 12, 182, 400, 440, 558, 605, 745, 814, 933
SfaNI GCATC 5 cut(s) 196, 295, 376, 685, 838
SmiMI CAYNNNNRTG 2 cut(s) 485, 681
SmlI CTYRAG 3 cut(s) 149, 725, 790
SmoI CTYRAG 3 cut(s) 149, 725, 790
Sse9I AATT 5 cut(s) 58, 64, 329, 416, 777
SsiI CCGC 2 cut(s) 5, 833
SspI AATATT 5 cut(s) 349, 860, 884, 902, 920
SspMI CTAG 2 cut(s) 390, 546
StyD4I CCNGG 2 cut(s) 311, 816
TaaI ACNGT 2 cut(s) 238, 667
TaqI TCGA 2 cut(s) 470, 775
TasI AATT 5 cut(s) 58, 64, 329, 416, 777
TfiI GAWTC 3 cut(s) 82, 263, 658
Tru1I TTAA 3 cut(s) 225, 441, 791
Tru9I TTAA 3 cut(s) 225, 441, 791
TscAI CASTG 1 cut(s) 766
TspDTI ATGAA 8 cut(s) 276, 306, 339, 699, 885, 891, 927, 939
TspGWI ACGGA 2 cut(s) 83, 260
TspRI CASTG 1 cut(s) 766
Tth111I GACNNNGTC 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 790
XapI RAATTY 3 cut(s) 329, 416, 777
XmiI GTMKAC 4 cut(s) 99, 411, 542, 933
XmnI GAANNNNTTC 4 cut(s) 267, 297, 330, 657
XspI CTAG 2 cut(s) 390, 546
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.