Rroxscaffold_2G00088740

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000303
Physical Location & Seq
Reverse (-)
10676996 .. 10677630
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088740.1

Sequence Viewer

Length: 285 bp
ATGAGTTCTTTAACGTCAGTAGCAAACAGGGCTTGGGTAGTGGCGGCAAGTGTTGGAGTTGTGGAGGCCTTGCAAAAAGACCAATTATTCCCTAAGTGGAGCCAAACTATGATATTGATGCAGCAACATGCCAAGACCCACCTCAGGTCTTGTTCTCAGGCTTACACCAAACTGTCTTCCTCATACTCTGCTTTGTTTTCAAGGAAACTCAGAGATGACGAGCCAAAGCAGTCCGAGGAGTCTCTTAGGAAAGTCATGTACCTCCACTCTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

94

Amino Acids

10.69

Weight (kDa)

9.66

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 14 - 93 2.5e-21 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 144, 271
AgsI TTSAA 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 246
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 246
BisI GCNGC 2 cut(s) 45, 122
BlsI GCNGC 2 cut(s) 46, 123
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 101, 276, 277
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 271
Bse21I CCTNAGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 144, 271
BseMII CTCAG 3 cut(s) 157, 170, 223
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 144, 271
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 68
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 3 cut(s) 156, 169, 222
BspLI GGNNCC 3 cut(s) 101, 276, 277
BssECI CCNNGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 174
BstDEI CTNAG 5 cut(s) 93, 143, 156, 209, 245
BstMAI GTCTC 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 143
BsuRI GGCC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 128, 256
CviJI RGCY 5 cut(s) 32, 68, 102, 161, 223
CviKI_1 RGCY 5 cut(s) 32, 68, 102, 161, 223
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 5 cut(s) 93, 143, 156, 209, 245
Eco147I AGGCCT 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 275
FaeI CATG 2 cut(s) 131, 259
FaiI YATR 4 cut(s) 110, 129, 184, 257
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 127, 255
Fnu4HI GCNGC 2 cut(s) 45, 122
Fsp4HI GCNGC 2 cut(s) 45, 122
GluI GCNGC 2 cut(s) 45, 122
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 2 cut(s) 131, 259
HinfI GANTC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 212, 235
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 73, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 5 cut(s) 93, 143, 156, 209, 245
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 131, 259
KflI GGGWCCC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 13, 130, 143
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 14
MboII GAAGA 1 cut(s) 168
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 5 cut(s) 58, 152, 190, 229, 272
MseI TTAA 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 29
NlaIII CATG 2 cut(s) 131, 259
NlaIV GGNNCC 3 cut(s) 101, 276, 277
NspI RCATGY 1 cut(s) 131
PceI AGGCCT 1 cut(s) 68
PkrI GCNGC 2 cut(s) 46, 123
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 101, 276, 277
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 2 cut(s) 45, 122
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 248
SetI ASST 4 cut(s) 17, 144, 149, 264
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 1 cut(s) 275
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 1 cut(s) 44
StuI AGGCCT 1 cut(s) 68
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 1 cut(s) 17
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 275
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.