Rorug02G0490100

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000303
Physical Location & Seq
Forward (+)
61923252 .. 61923440
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0490100.1

Sequence Viewer

Length: 189 bp
ATGGTTGCTCGTAACCCATCTGATTTTGCACGGGTGACTTTGGGAGCAGCGGGTACGACAACGCTGCAGGACAACCATTGGTATATGGTTGGGCGTCTGCTCAGGCCAAAGGCTCGCTTCCCTGGCTTCAAAGAGACGATTCCCTCGATTTGGCGCATTAAATCGGGGCTTGATGTTCATGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

62

Amino Acids

6.97

Weight (kDa)

10.4

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 47, 64
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 46
BbvI GCAGC 2 cut(s) 51, 59
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 48, 65
BlsI GCNGC 2 cut(s) 49, 66
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 172
Bpu10I CCTNAGC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 51, 59
BshFI GGCC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 106
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 51, 59
BsuRI GGCC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 178
CfoI GCGC 1 cut(s) 156
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 179
CviJI RGCY 4 cut(s) 106, 113, 126, 169
CviKI_1 RGCY 4 cut(s) 106, 113, 126, 169
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 84, 86, 180
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 1 cut(s) 178
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 48, 65
Fsp4HI GCNGC 2 cut(s) 48, 65
GlaI GCGC 1 cut(s) 155
GluI GCNGC 2 cut(s) 48, 65
HaeIII GGCC 1 cut(s) 106
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 29, 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 53, 88, 108, 135
Lsp1109I GCAGC 2 cut(s) 51, 59
LweI GCATC 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 11, 34
MnlI CCTC 1 cut(s) 154
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 34
PagI TCATGA 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 49, 66
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PstI CTGCAG 1 cut(s) 69
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 48, 65
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 65
SsiI CCGC 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 121
TaqI TCGA 1 cut(s) 146
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 2 cut(s) 47, 64
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.