Rorug02G0489900

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000303
Physical Location & Seq
Reverse (-)
61904201 .. 61906674
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0489900.1

Sequence Viewer

Length: 1065 bp
ATGAACAAGTTTCAGAAGAATGGCCTCCTCTCGTTTTTTTGCCTCCTCCTTTTACTCCCAATCTTCGCTTCCGCTGAGTGTACGTGCGACGTCGAAGATGAAGGTGTTAACAACAAAAGCAAAGCTCTCAAATACAAACTCGGCGCATTCGCTTCCATACTCGTCGCCGGTGCAGTCGGTGTTTGTATCCCAATTCTAGGGAAGACAATTCCGGCTCTGCAACCGGACAAGAATATCTTCTTCATCGTCAAGGCTTTCGCCGCCGGCGTCATATTGGCCACCGGATTCATCCACGTGCTTCCGGACGCTTTCGACAACTTGACGTCGCCGTGCCTGAAAGAAAACCCATGGGGGAAGTTTCCCTTCACCGGATTTGTGGCCATGATGGCGGCCATCGGAACTTTGATGGTGGATTCCATTGCTACTTCTTATTTCAGCGGGTCTCACTTCAATAAGGCTCAGAATCAGATTAATGGAGATGAGGAGAAAGAGGGACAGCACGAGGGGCACGTACATGTTCATACACATGGCACTCATGGTCATTCTCATGGTTCGCTTGATACGAATTCGGCTGAATCACAACTTCTTCGGCACAGAGTGATTTCAAAGGTGTTGGAGTTGGGAATTGTGGTGCACTCGGTGATTATTGGAATTTCATTGGGTGCTTCTGAAAGTCCTGAAACAATTCGACCTCTTGTAGCTGCTTTGACTTTCCATCAATTTTTTGAAGGCATGGGACTTGGTGGTTGCATAGCTCAGGCGAGAGAATCGCGAATAACAACTATAATCATGGTGCTGTTCTTCTCCCTTACAACCCCTGTTGGAATCGCGATTGGAATTGGAATATCAAGCAATTACAAGGAAAACAGTCCATCTGCTCTCATACTTGAAGGAACTTTTAATGCGGCATCAGCTGGGATCTTAATCTACATGGCTCTGGTCGATCTGCTAGCGGCTGATTTTATGAACCCGAAAATGCAGAAGAATGTGAAGCTTCAAATTGGGGCAAATGCTTCACTTCTTTTTGGAGCTGGTTGCATGTCTCTATTGGCCAAATGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

354

Amino Acids

37.73

Weight (kDa)

6.66

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 44 - 351 5.3e-82 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 93, 326
AccII CGCG 2 cut(s) 772, 830
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 6 cut(s) 72, 261, 389, 438, 905, 953
AclWI GGATC 1 cut(s) 926
AcoI YGGCCR 4 cut(s) 276, 378, 390, 1050
AcsI RAATTY 2 cut(s) 565, 651
AcvI CACGTG 1 cut(s) 295
AcyI GRCGYC 3 cut(s) 90, 267, 323
AdeI CACNNNGTG 2 cut(s) 598, 640
AfaI GTAC 2 cut(s) 82, 513
AfiI CCNNNNNNNGG 2 cut(s) 197, 368
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 5 cut(s) 451, 606, 728, 890, 998
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 6 cut(s) 125, 701, 755, 914, 994, 1031
AluI AGCT 6 cut(s) 125, 701, 755, 914, 994, 1031
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 2 cut(s) 447, 1047
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 1 cut(s) 926
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 5 cut(s) 22, 276, 378, 390, 1050
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 2 cut(s) 565, 651
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 2 cut(s) 236, 684
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 358, 652
AsuNHI GCTAGC 1 cut(s) 949
BaeGI GKGCMC 2 cut(s) 510, 636
BalI TGGCCA 3 cut(s) 278, 380, 1052
BauI CACGAG 1 cut(s) 500
BbrPI CACGTG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 1 cut(s) 688
BccI CCATC 5 cut(s) 379, 400, 401, 723, 880
BceAI ACGGC 1 cut(s) 313
BciVI GTATCC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 447, 1047
BfaI CTAG 2 cut(s) 197, 950
BfuI GTATCC 1 cut(s) 197
BglI GCCNNNNNGGC 2 cut(s) 386, 1058
BisI GCNGC 5 cut(s) 261, 390, 702, 906, 954
BlsI GCNGC 5 cut(s) 262, 391, 703, 907, 955
BmsI GCATC 1 cut(s) 917
BmtI GCTAGC 1 cut(s) 953
BpiI GAAGAC 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 756
BsaAI YACGTR 3 cut(s) 84, 295, 511
BsaBI GATNNNNATC 1 cut(s) 923
BsaHI GRCGYC 3 cut(s) 90, 267, 323
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 347
BsaWI WCCGGW 4 cut(s) 223, 281, 301, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 368
Bse118I RCCGGY 2 cut(s) 167, 263
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 1 cut(s) 923
BseAI TCCGGA 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 2 cut(s) 197, 368
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 3 cut(s) 66, 473, 770
BseRI GAGGAG 3 cut(s) 17, 35, 497
BseSI GKGCMC 2 cut(s) 510, 636
BseXI GCAGC 1 cut(s) 688
BseYI CCCAGC 1 cut(s) 914
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 772, 830
BshFI GGCC 5 cut(s) 24, 278, 380, 392, 1052
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 7 cut(s) 168, 212, 224, 264, 282, 302, 369
BslFI GGGAC 2 cut(s) 507, 750
BslI CCNNNNNNNGG 2 cut(s) 197, 368
BsmAI GTCTC 2 cut(s) 447, 1047
BsmFI GGGAC 2 cut(s) 507, 750
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 5 cut(s) 24, 278, 380, 392, 1052
Bso31I GGTCTC 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 510, 636
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 2 cut(s) 918, 943
Bsp19I CCATGG 1 cut(s) 347
Bsp68I TCGCGA 2 cut(s) 772, 830
BspACI CCGC 6 cut(s) 72, 261, 389, 438, 905, 953
BspANI GGCC 5 cut(s) 24, 278, 380, 392, 1052
BspCNI CTCAG 3 cut(s) 67, 472, 769
BspEI TCCGGA 1 cut(s) 301
BspFNI CGCG 2 cut(s) 772, 830
BspOI GCTAGC 1 cut(s) 953
BspPI GGATC 1 cut(s) 926
BspTNI GGTCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 2 cut(s) 167, 263
BssAI RCCGGY 2 cut(s) 167, 263
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 2 cut(s) 918, 943
BssNI GRCGYC 3 cut(s) 90, 267, 323
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 869
BstACI GRCGYC 3 cut(s) 90, 267, 323
BstBAI YACGTR 3 cut(s) 84, 295, 511
BstC8I GCNNGC 2 cut(s) 265, 951
BstDEI CTNAG 3 cut(s) 75, 459, 756
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 2 cut(s) 772, 830
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 2 cut(s) 921, 946
BstMAI GTCTC 2 cut(s) 447, 1047
BstMBI GATC 2 cut(s) 918, 943
BstMWI GCNNNNNNNGC 5 cut(s) 260, 386, 505, 911, 1058
BstNSI RCATGY 2 cut(s) 518, 1042
BstSLI GKGCMC 2 cut(s) 510, 636
BstUI CGCG 2 cut(s) 772, 830
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 5 cut(s) 24, 278, 380, 392, 1052
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 288
BtuMI TCGCGA 2 cut(s) 772, 830
Cac8I GCNNGC 2 cut(s) 265, 951
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 2 cut(s) 167, 263
CseI GACGC 2 cut(s) 256, 314
Csp6I GTAC 2 cut(s) 81, 512
CviQI GTAC 2 cut(s) 81, 512
DdeI CTNAG 3 cut(s) 75, 459, 756
DpnI GATC 2 cut(s) 920, 945
DpnII GATC 2 cut(s) 918, 943
DraIII CACNNNGTG 2 cut(s) 598, 640
EaeI YGGCCR 4 cut(s) 276, 378, 390, 1050
Eco130I CCWWGG 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 447
Eco72I CACGTG 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 347, 379
FaqI GGGAC 2 cut(s) 507, 750
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 5 cut(s) 261, 390, 702, 906, 954
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 5 cut(s) 261, 390, 702, 906, 954
FspBI CTAG 2 cut(s) 197, 950
GlaI GCGC 1 cut(s) 145
GluI GCNGC 5 cut(s) 261, 390, 702, 906, 954
GsaI CCCAGC 1 cut(s) 918
HaeIII GGCC 5 cut(s) 24, 278, 380, 392, 1052
HapII CCGG 7 cut(s) 168, 212, 224, 264, 282, 302, 369
HgaI GACGC 2 cut(s) 256, 314
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 3 cut(s) 90, 267, 323
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 992
HinfI GANTC 6 cut(s) 285, 413, 463, 575, 767, 825
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 7 cut(s) 168, 212, 224, 264, 282, 302, 369
HphI GGTGA 2 cut(s) 358, 652
Hpy166II GTNNAC 3 cut(s) 81, 109, 634
Hpy188I TCNGA 5 cut(s) 15, 398, 462, 468, 670
Hpy188III TCNNGA 4 cut(s) 302, 677, 771, 829
Hpy8I GTNNAC 3 cut(s) 81, 109, 634
Hpy99I CGWCG 4 cut(s) 92, 95, 167, 328
HpyAV CCTTC 4 cut(s) 95, 373, 722, 884
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4IV ACGT 5 cut(s) 83, 90, 294, 323, 510
HpyCH4V TGCA 6 cut(s) 173, 220, 634, 750, 979, 1038
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 386, 505, 911, 1058
HpyF3I CTNAG 3 cut(s) 75, 459, 756
HpySE526I ACGT 5 cut(s) 83, 90, 294, 323, 510
Hsp92I GRCGYC 3 cut(s) 90, 267, 323
HspAI GCGC 1 cut(s) 144
Kpn2I TCCGGA 1 cut(s) 301
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 918, 943
LmnI GCTCC 1 cut(s) 1028
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 1 cut(s) 917
MaeI CTAG 2 cut(s) 197, 950
MaeII ACGT 5 cut(s) 83, 90, 294, 323, 510
MalI GATC 2 cut(s) 920, 945
MboI GATC 2 cut(s) 918, 943
MboII GAAGA 9 cut(s) 28, 55, 107, 214, 229, 232, 578, 793, 994
MflI RGATCY 1 cut(s) 918
MhlI GDGCHC 2 cut(s) 510, 636
MlsI TGGCCA 3 cut(s) 278, 380, 1052
MluNI TGGCCA 3 cut(s) 278, 380, 1052
MmeI TCCRAC 2 cut(s) 594, 802
MnlI CCTC 8 cut(s) 35, 38, 53, 56, 475, 484, 496, 702
Mox20I TGGCCA 3 cut(s) 278, 380, 1052
MreI CGCCGGCG 1 cut(s) 263
MroI TCCGGA 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 263
MroXI GAANNNNTTC 2 cut(s) 236, 684
MscI TGGCCA 3 cut(s) 278, 380, 1052
MseI TTAA 5 cut(s) 108, 471, 900, 923, 1063
MslI CAYNNNNRTG 4 cut(s) 293, 513, 525, 546
Msp20I TGGCCA 3 cut(s) 278, 380, 1052
MspA1I CMGCKG 3 cut(s) 74, 438, 914
MspI CCGG 7 cut(s) 168, 212, 224, 264, 282, 302, 369
Mva1269I GAATGC 1 cut(s) 146
MvnI CGCG 2 cut(s) 772, 830
MwoI GCNNNNNNNGC 5 cut(s) 260, 386, 505, 911, 1058
NaeI GCCGGC 1 cut(s) 265
NcoI CCATGG 1 cut(s) 347
NdeII GATC 2 cut(s) 918, 943
NgoMIV GCCGGC 1 cut(s) 263
NheI GCTAGC 1 cut(s) 949
NmeAIII GCCGAG 1 cut(s) 120
NruI TCGCGA 2 cut(s) 772, 830
NspI RCATGY 2 cut(s) 518, 1042
PciI ACATGT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 507, 560
PctI GAATGC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 265
PdmI GAANNNNTTC 2 cut(s) 236, 684
PfeI GAWTC 6 cut(s) 285, 413, 463, 575, 767, 825
PkrI GCNGC 5 cut(s) 262, 391, 703, 907, 955
PmaCI CACGTG 1 cut(s) 295
PmlI CACGTG 1 cut(s) 295
Ppu21I YACGTR 3 cut(s) 84, 295, 511
PscI ACATGT 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 471
PspCI CACGTG 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 914
PsuI RGATCY 1 cut(s) 918
PvuII CAGCTG 1 cut(s) 914
RruI TCGCGA 2 cut(s) 772, 830
RsaI GTAC 2 cut(s) 82, 513
RsaNI GTAC 2 cut(s) 81, 512
RseI CAYNNNNRTG 4 cut(s) 293, 513, 525, 546
SaqAI TTAA 5 cut(s) 108, 471, 900, 923, 1063
SatI GCNGC 5 cut(s) 261, 390, 702, 906, 954
Sau3AI GATC 2 cut(s) 918, 943
SduI GDGCHC 2 cut(s) 510, 636
SfaNI GCATC 1 cut(s) 917
SgrAI CRCCGGYG 2 cut(s) 167, 263
SmiMI CAYNNNNRTG 4 cut(s) 293, 513, 525, 546
SsiI CCGC 6 cut(s) 72, 261, 389, 438, 905, 953
SspMI CTAG 2 cut(s) 197, 950
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 869
TaiI ACGT 5 cut(s) 86, 93, 297, 326, 513
TaqI TCGA 4 cut(s) 93, 312, 688, 942
TauI GCSGC 4 cut(s) 263, 392, 908, 956
TfiI GAWTC 6 cut(s) 285, 413, 463, 575, 767, 825
Tru1I TTAA 5 cut(s) 108, 471, 900, 923, 1063
Tru9I TTAA 5 cut(s) 108, 471, 900, 923, 1063
TseI GCWGC 1 cut(s) 701
TspDTI ATGAA 7 cut(s) 17, 114, 232, 277, 509, 645, 980
VneI GTGCAC 1 cut(s) 632
VspI ATTAAT 1 cut(s) 471
XapI RAATTY 2 cut(s) 565, 651
XceI RCATGY 2 cut(s) 518, 1042
XmnI GAANNNNTTC 2 cut(s) 236, 684
XspI CTAG 2 cut(s) 197, 950
ZraI GACGTC 2 cut(s) 91, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.