Prupe.3G229900_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000303
Physical Location & Seq
Forward (+)
22788295 .. 22789498
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G229900.1

Sequence Viewer

Length: 459 bp
ATGGCTTTTTTTTCCCCACATTTTATGGGGCTTAGTTTTAGTGTCACTCTCCCTCCATATAAAAGCAACACCAACTCCCCATTTACTTCATCAAAATTCAAACACATCAAAACATCAGTTTTACTTCCCATCAAGTTTAAGAGTGTTCTTATTAAGTTTACAGAAGAAGATATCAATATGAGCAGTTCATCATCACCAGCAGCAAGGAGAGGTTGGGTGGTGGCAGCAAGTGTTGGAGTTGTGGAGGCCTTGAAAGACCAAGGGATCTGCAGGTGGAATTATACTATGAGATTAATGCAGCAGCATGCAAAGAGCCAACTTGGGTCTTTTTCTCAGGCTAACAAGCTCTCTTCCTCATCCTCTGCTCTGGTTTCAAGCAAGCTTAGAGATGAGAAGGTGAAGCAGTCTGAAGAGTCTCTCAGGAAAGTCATGTACCTCAGCTGCTGGGGACCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

9.96

Isoelectric Point (pI)

66.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 261
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 434
AgsI TTSAA 3 cut(s) 100, 253, 375
AluBI AGCT 3 cut(s) 346, 382, 441
AluI AGCT 3 cut(s) 346, 382, 441
Alw26I GTCTC 1 cut(s) 420
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 444
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 5 cut(s) 200, 224, 298, 301, 441
ApoI RAATTY 1 cut(s) 95
AseI ATTAAT 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 186, 409
AvaII GGWCC 1 cut(s) 449
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 5 cut(s) 212, 236, 310, 313, 428
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 261
BisI GCNGC 5 cut(s) 201, 225, 299, 302, 442
BlsI GCNGC 5 cut(s) 202, 226, 300, 303, 443
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 450, 451
Bpu10I CCTNAGC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 37, 59, 67, 89
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 356
BseMII CTCAG 3 cut(s) 347, 433, 451
BseXI GCAGC 5 cut(s) 212, 236, 310, 313, 428
BseYI CCCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 420
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 264
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 3 cut(s) 346, 432, 450
BspLI GGNNCC 2 cut(s) 450, 451
BspMAI CTGCAG 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 355, 405
BstC8I GCNNGC 2 cut(s) 306, 380
BstDEI CTNAG 5 cut(s) 32, 333, 383, 419, 437
BstF5I GGATG 1 cut(s) 356
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 5 cut(s) 212, 236, 310, 313, 428
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 356
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 306, 380
CaiI CAGNNNCTG 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 433
CviAII CATG 2 cut(s) 305, 430
CviJI RGCY 8 cut(s) 5, 31, 248, 315, 338, 346, 382, 441
CviKI_1 RGCY 8 cut(s) 5, 31, 248, 315, 338, 346, 382, 441
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 5 cut(s) 32, 333, 383, 419, 437
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 355, 405
EarI CTCTTC 2 cut(s) 355, 405
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 248
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 449
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 308, 433
FaiI YATR 8 cut(s) 26, 58, 60, 179, 282, 287, 306, 431
FatI CATG 2 cut(s) 304, 429
Fnu4HI GCNGC 5 cut(s) 201, 225, 299, 302, 442
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 5 cut(s) 201, 225, 299, 302, 442
GluI GCNGC 5 cut(s) 201, 225, 299, 302, 442
GsaI CCCAGC 1 cut(s) 448
HaeIII GGCC 1 cut(s) 248
Hin1II CATG 2 cut(s) 308, 433
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 413
HphI GGTGA 2 cut(s) 186, 409
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 270, 298, 308
HpyF3I CTNAG 5 cut(s) 32, 333, 383, 419, 437
Hsp92II CATG 2 cut(s) 308, 433
KflI GGGWCCC 1 cut(s) 449
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 210, 256, 320, 353, 406, 430
Lsp1109I GCAGC 5 cut(s) 212, 236, 310, 313, 428
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 4 cut(s) 176, 179, 342, 422
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 1 cut(s) 264
MluCI AATT 3 cut(s) 95, 277, 454
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 6 cut(s) 63, 203, 238, 364, 370, 446
MseI TTAA 3 cut(s) 138, 153, 293
MspA1I CMGCKG 1 cut(s) 441
MunI CAATTG 1 cut(s) 454
NdeII GATC 1 cut(s) 264
NlaIII CATG 2 cut(s) 308, 433
NlaIV GGNNCC 2 cut(s) 450, 451
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PaqCI CACCTGC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 248
PkrI GCNGC 5 cut(s) 202, 226, 300, 303, 443
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PpuMI RGGWCCY 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 450, 451
PspPI GGNCC 1 cut(s) 449
PspPPI RGGWCCY 1 cut(s) 449
PstI CTGCAG 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 441
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 3 cut(s) 138, 153, 293
SatI GCNGC 5 cut(s) 201, 225, 299, 302, 442
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 422
SetI ASST 7 cut(s) 214, 275, 348, 384, 399, 438, 443
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 1 cut(s) 449
SphI GCATGC 1 cut(s) 308
Sse9I AATT 3 cut(s) 95, 277, 454
SseBI AGGCCT 1 cut(s) 248
StuI AGGCCT 1 cut(s) 248
StyI CCWWGG 1 cut(s) 259
TasI AATT 3 cut(s) 95, 277, 454
Tru1I TTAA 3 cut(s) 138, 153, 293
Tru9I TTAA 3 cut(s) 138, 153, 293
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 5 cut(s) 200, 224, 298, 301, 441
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 78, 177
VpaK11BI GGWCC 1 cut(s) 449
VspI ATTAAT 1 cut(s) 293
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.