MD09G1097100.v1.1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000303
Physical Location & Seq
Reverse (-)
7054478 .. 7054750
273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1097100.v1.1.491

Sequence Viewer

Length: 273 bp
ATGAGTTCAACAAGAAGCAAAGTTATAGTGGCTGCAAGTGTGGGAGTTGTGGAGGCATTGAAAGAACAAGGAAATATGTGCAGATGGAACTCTGCTTTGAGATCCATGCACCAACAAGCCAAGAACCAAATTAGGTTATTTTCTCAGGCTAACCGCAAGCTCTCTTCTCCTACTTCGTCAGCTCTGAGCAGATCAGTGAGAGACGATAAGGTGAAGAAATCAGAGGAGTCTTTGAGGACAGCCATGCACTTATGCTGCTGGGGTCCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

91

Amino Acids

10.01

Weight (kDa)

10.38

Isoelectric Point (pI)

74.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 89 4.8e-29 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 96
AgsI TTSAA 2 cut(s) 9, 61
AluBI AGCT 2 cut(s) 160, 182
AluI AGCT 2 cut(s) 160, 182
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 32, 255
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 19, 242
BccI CCATC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 195
BisI GCNGC 2 cut(s) 33, 256
BlsI GCNGC 2 cut(s) 34, 257
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BseMII CTCAG 2 cut(s) 158, 176
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 19, 242
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 195
BsmBI CGTCTC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 101, 191
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 157, 177
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 96
BssMI GATC 2 cut(s) 101, 191
Bst6I CTCTTC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 144, 185
BstKTI GATC 2 cut(s) 104, 194
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 101, 191
BstV1I GCAGC 2 cut(s) 19, 242
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 263
CviAII CATG 2 cut(s) 106, 244
CviJI RGCY 6 cut(s) 32, 119, 149, 160, 182, 242
CviKI_1 RGCY 6 cut(s) 32, 119, 149, 160, 182, 242
DdeI CTNAG 2 cut(s) 144, 185
DpnI GATC 2 cut(s) 103, 193
DpnII GATC 2 cut(s) 101, 191
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 2 cut(s) 109, 247
FaiI YATR 5 cut(s) 26, 77, 107, 245, 253
FatI CATG 2 cut(s) 105, 243
Fnu4HI GCNGC 2 cut(s) 33, 256
Fsp4HI GCNGC 2 cut(s) 33, 256
GluI GCNGC 2 cut(s) 33, 256
GsaI CCCAGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 109, 247
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 186, 223
HpyCH4V TGCA 4 cut(s) 35, 81, 109, 247
HpyF3I CTNAG 2 cut(s) 144, 185
Hsp92II CATG 2 cut(s) 109, 247
Kzo9I GATC 2 cut(s) 101, 191
LpnPI CCDG 2 cut(s) 131, 244
Lsp1109I GCAGC 2 cut(s) 19, 242
MalI GATC 2 cut(s) 103, 193
MboI GATC 2 cut(s) 101, 191
MboII GAAGA 2 cut(s) 156, 226
MflI RGATCY 1 cut(s) 101
MluCI AATT 1 cut(s) 129
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 3 cut(s) 46, 217, 228
NdeII GATC 2 cut(s) 101, 191
NlaIII CATG 2 cut(s) 109, 247
NlaIV GGNNCC 1 cut(s) 264
PkrI GCNGC 2 cut(s) 34, 257
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 1 cut(s) 101
SatI GCNGC 2 cut(s) 33, 256
Sau3AI GATC 2 cut(s) 101, 191
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 236
SetI ASST 4 cut(s) 137, 162, 184, 213
SgeI CNNG 9 cut(s) 24, 48, 80, 118, 128, 133, 158, 169, 256
SinI GGWCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 154
TasI AATT 1 cut(s) 129
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 32, 255
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.