MD17G1085200.v1.1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
7006397 .. 7008469
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1085200.v1.1.491

Sequence Viewer

Length: 630 bp
ATGCTCATATCCTTCATCAAACACTTAAACATTCACAATCACTACCAAAAGAATTCAGAATACCCAAAGGAGAGAAAAGAAATCATGAGTTCATCAAGTGCAAGCAAGGCTATAGTGGCAGCAAGTGTTGGAGTTGTGGAGGCACTCAAGGACCAAGGGATTTGCAGATGGAACTCTGCTTTGAGATATGTAGGCCAACAAGCCAAGAGCCAAGTGAGGTCATTTTCTCAGGCCAACAGCAAGCTCTCTTCTCCTTCTGCTTCAGTTCTGAGTAAAGTGAGAGATGAGAAGATGAAGAAATCAGAGGAGTCTTTGAGGACAGTCATGTACCTCAGCTGCTGGGAAAATATGACTATTTCATCAGCAGCAGCAAGGAGAGGTTGGGTAGTGGCAGCAAGTGTTGGAGTTGTGGAGGCCTTGAAAGACCAGGGGATCTGCAGGTGGAATTATACTATGAGATTACTGCAGCAGCATGCCAAGAACCAACTTGGGTCGTTTTCTCAGGCCAACAAGTTCTCTTCCCCATCTTCTGCTTTGATCTCAATTCAAGTTAGACAAGATGAGAAGATAAAGCAGTCTGAGGAGTCTCTCAGGAAAGTCATGTACCTCAGCTGCTGGGGTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

210

Amino Acids

23.44

Weight (kDa)

9.81

Isoelectric Point (pI)

66.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 39 - 114 2.8e-29 Wound-induced protein
DUF3774 PF12609 130 - 208 4.9e-34 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 429
Acc36I ACCTGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 2 cut(s) 329, 605
AgsI TTSAA 2 cut(s) 421, 548
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 3 cut(s) 244, 336, 612
AluI AGCT 3 cut(s) 244, 336, 612
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 2 cut(s) 339, 615
AoxI GGCC 4 cut(s) 193, 231, 414, 504
ApeKI GCWGC 8 cut(s) 119, 336, 365, 368, 392, 466, 469, 612
ApoI RAATTY 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 151, 620
AvaII GGWCC 2 cut(s) 151, 620
BbvCI CCTCAGC 2 cut(s) 332, 608
BbvI GCAGC 8 cut(s) 131, 323, 377, 380, 404, 478, 481, 599
BccI CCATC 2 cut(s) 162, 532
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 591
BfmI CTRYAG 3 cut(s) 111, 436, 464
BfuAI ACCTGC 1 cut(s) 429
BisI GCNGC 8 cut(s) 120, 337, 366, 369, 393, 467, 470, 613
BlsI GCNGC 8 cut(s) 121, 338, 367, 370, 394, 468, 471, 614
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 2 cut(s) 151, 620
BmgT120I GGNCC 2 cut(s) 151, 620
BmiI GGNNCC 2 cut(s) 621, 622
BmrFI CCNGG 1 cut(s) 428
Bpu10I CCTNAGC 2 cut(s) 332, 608
BpuEI CTTGAG 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 154, 427
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 154, 427
BseMII CTCAG 7 cut(s) 242, 260, 346, 515, 570, 604, 622
BseRI GAGGAG 2 cut(s) 320, 596
BseXI GCAGC 8 cut(s) 131, 323, 377, 380, 404, 478, 481, 599
BseYI CCCAGC 2 cut(s) 339, 615
BshFI GGCC 4 cut(s) 195, 233, 416, 506
BslFI GGGAC 1 cut(s) 606
BsmAI GTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 4 cut(s) 195, 233, 416, 506
Bsp143I GATC 2 cut(s) 432, 537
BspANI GGCC 4 cut(s) 195, 233, 416, 506
BspCNI CTCAG 7 cut(s) 241, 261, 345, 514, 571, 603, 621
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 621, 622
BspMAI CTGCAG 2 cut(s) 440, 468
BspMI ACCTGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 154, 427
BssMI GATC 2 cut(s) 432, 537
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 253, 523
BstC8I GCNNGC 3 cut(s) 103, 242, 474
BstDEI CTNAG 7 cut(s) 228, 269, 332, 501, 579, 590, 608
BstKTI GATC 2 cut(s) 435, 540
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 2 cut(s) 432, 537
BstMWI GCNNNNNNNGC 2 cut(s) 107, 116
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 3 cut(s) 111, 436, 464
BstV1I GCAGC 8 cut(s) 131, 323, 377, 380, 404, 478, 481, 599
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 4 cut(s) 195, 233, 416, 506
BveI ACCTGC 1 cut(s) 429
Cac8I GCNNGC 3 cut(s) 103, 242, 474
CaiI CAGNNNCTG 2 cut(s) 339, 615
CciI TCATGA 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 151, 620
Csp6I GTAC 2 cut(s) 328, 604
CviAII CATG 4 cut(s) 85, 325, 473, 601
CviQI GTAC 2 cut(s) 328, 604
DdeI CTNAG 7 cut(s) 228, 269, 332, 501, 579, 590, 608
DpnI GATC 2 cut(s) 434, 539
DpnII GATC 2 cut(s) 432, 537
Eam1104I CTCTTC 2 cut(s) 253, 523
EarI CTCTTC 2 cut(s) 253, 523
Eco130I CCWWGG 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 151, 620
Eco57I CTGAAG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 4 cut(s) 88, 328, 476, 604
FaqI GGGAC 1 cut(s) 606
FatI CATG 4 cut(s) 84, 324, 472, 600
Fnu4HI GCNGC 8 cut(s) 120, 337, 366, 369, 393, 467, 470, 613
Fsp4HI GCNGC 8 cut(s) 120, 337, 366, 369, 393, 467, 470, 613
GluI GCNGC 8 cut(s) 120, 337, 366, 369, 393, 467, 470, 613
GsaI CCCAGC 2 cut(s) 343, 619
HaeIII GGCC 4 cut(s) 195, 233, 416, 506
Hin1II CATG 4 cut(s) 88, 328, 476, 604
HinfI GANTC 2 cut(s) 308, 584
Hpy188I TCNGA 4 cut(s) 58, 270, 304, 580
Hpy188III TCNNGA 2 cut(s) 85, 592
HpyAV CCTTC 2 cut(s) 22, 264
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 4 cut(s) 101, 165, 438, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 116
HpyF3I CTNAG 7 cut(s) 228, 269, 332, 501, 579, 590, 608
Hsp92II CATG 4 cut(s) 88, 328, 476, 604
KflI GGGWCCC 1 cut(s) 620
Kzo9I GATC 2 cut(s) 432, 537
LpnPI CCDG 8 cut(s) 215, 325, 413, 424, 440, 488, 577, 601
Lsp1109I GCAGC 8 cut(s) 131, 323, 377, 380, 404, 478, 481, 599
MalI GATC 2 cut(s) 434, 539
MboI GATC 2 cut(s) 432, 537
MboII GAAGA 6 cut(s) 240, 301, 307, 510, 519, 577
MfeI CAATTG 1 cut(s) 625
MflI RGATCY 1 cut(s) 432
MluCI AATT 4 cut(s) 52, 445, 543, 625
MlyI GAGTC 2 cut(s) 317, 593
MmeI TCCRAC 2 cut(s) 109, 382
MnlI CCTC 9 cut(s) 133, 210, 298, 309, 341, 371, 406, 574, 617
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 2 cut(s) 336, 612
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 625
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 107, 116
NdeII GATC 2 cut(s) 432, 537
NlaIII CATG 4 cut(s) 88, 328, 476, 604
NlaIV GGNNCC 2 cut(s) 621, 622
NspI RCATGY 1 cut(s) 476
PaeI GCATGC 1 cut(s) 476
PagI TCATGA 1 cut(s) 84
PaqCI CACCTGC 1 cut(s) 429
PceI AGGCCT 1 cut(s) 416
PkrI GCNGC 8 cut(s) 121, 338, 367, 370, 394, 468, 471, 614
PleI GAGTC 2 cut(s) 316, 592
PpsI GAGTC 2 cut(s) 316, 592
PpuMI RGGWCCY 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 426
PspFI CCCAGC 2 cut(s) 339, 615
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 621, 622
PspPI GGNCC 2 cut(s) 151, 620
PspPPI RGGWCCY 1 cut(s) 620
PstI CTGCAG 2 cut(s) 440, 468
PstNI CAGNNNCTG 2 cut(s) 339, 615
PsuI RGATCY 1 cut(s) 432
PvuII CAGCTG 2 cut(s) 336, 612
RsaI GTAC 2 cut(s) 329, 605
RsaNI GTAC 2 cut(s) 328, 604
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 8 cut(s) 120, 337, 366, 369, 393, 467, 470, 613
Sau3AI GATC 2 cut(s) 432, 537
Sau96I GGNCC 2 cut(s) 151, 620
SchI GAGTC 2 cut(s) 317, 593
ScrFI CCNGG 1 cut(s) 428
SetI ASST 8 cut(s) 221, 246, 333, 338, 382, 443, 609, 614
SfcI CTRYAG 3 cut(s) 111, 436, 464
SinI GGWCC 2 cut(s) 151, 620
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SphI GCATGC 1 cut(s) 476
Sse9I AATT 4 cut(s) 52, 445, 543, 625
SseBI AGGCCT 1 cut(s) 416
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 322
TasI AATT 4 cut(s) 52, 445, 543, 625
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 8 cut(s) 119, 336, 365, 368, 392, 466, 469, 612
TspDTI ATGAA 4 cut(s) 4, 81, 308, 348
VpaK11BI GGWCC 2 cut(s) 151, 620
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.