RLG00000021284

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000303
Physical Location & Seq
Forward (+)
73795804 .. 73802787
6984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021284

Sequence Viewer

Length: 426 bp
ATGAGTACTACTTCAAGAACAAGCAAGGCTATTGTGGCAGCAAGTGTCGGAGTTGTGGAGGCACTGAAGGATCAAGGAATTTGCAGGTGGAATTCCGCAATAAGATCTATTCACCAACAAGCCAAGACCCAGTTCAGGTCCTTTTCTCAGGCCAACACCAAGTTATCTTCTTCTTCAACCTCTGCTTTGAGCAGAGTTAGAGATGAGAAGCTGAAGAAGTCGGAGGAGTCCTTGAGGACACATTCACCCCACGGAGCTCAAATTCCCTTTGAACCTCCAAATCCAAAGGAAGCTATAAAGTGGTTTTATCTTGCTTCTTTTCAGGGCTATGTCCGAGCTCAATACCAACTTTCAATTTGTCTGTATCAGGGACGTGAGGCAGATCGTAACATGAAAGAAGCGGTGATGGTGTCAAATAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

142

Amino Acids

15.77

Weight (kDa)

9.96

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 80 2.5e-23 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 75
AciI CCGC 2 cut(s) 96, 401
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 3 cut(s) 78, 91, 261
AcuI CTGAAG 2 cut(s) 86, 233
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 4 cut(s) 15, 177, 272, 354
AjiI CACGTC 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 4 cut(s) 211, 257, 293, 338
AluI AGCT 4 cut(s) 211, 257, 293, 338
Alw21I GWGCWC 2 cut(s) 259, 340
AlwI GGATC 1 cut(s) 78
AoxI GGCC 2 cut(s) 150, 420
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 3 cut(s) 78, 91, 261
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 104, 237, 415
AvaII GGWCC 1 cut(s) 138
BanII GRGCYC 2 cut(s) 259, 340
Bbv12I GWGCWC 2 cut(s) 259, 340
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 400
BfuAI ACCTGC 1 cut(s) 75
BglII AGATCT 1 cut(s) 104
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 2 cut(s) 152, 422
BsiHKAI GWGCWC 2 cut(s) 259, 340
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 152, 422
Bsp1286I GDGCHC 2 cut(s) 259, 340
Bsp143I GATC 3 cut(s) 70, 104, 382
BspACI CCGC 2 cut(s) 96, 401
BspANI GGCC 2 cut(s) 152, 422
BspCNI CTCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 70, 104, 382
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 250
BstKTI GATC 3 cut(s) 73, 107, 385
BstMBI GATC 3 cut(s) 70, 104, 382
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 2 cut(s) 152, 422
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 374
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 391
CviJI RGCY 9 cut(s) 29, 122, 152, 211, 257, 293, 327, 338, 422
CviKI_1 RGCY 9 cut(s) 29, 122, 152, 211, 257, 293, 327, 338, 422
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 72, 106, 384
DpnII GATC 3 cut(s) 70, 104, 382
Ecl136II GAGCTC 2 cut(s) 257, 338
Eco147I AGGCCT 1 cut(s) 422
Eco24I GRGCYC 2 cut(s) 259, 340
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 2 cut(s) 257, 338
Eco57I CTGAAG 2 cut(s) 86, 233
EcoICRI GAGCTC 2 cut(s) 257, 338
EcoO109I RGGNCCY 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 91
EcoT38I GRGCYC 2 cut(s) 259, 340
FaeI CATG 1 cut(s) 394
FaiI YATR 3 cut(s) 296, 330, 392
FaqI GGGAC 1 cut(s) 384
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 2 cut(s) 259, 340
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 2 cut(s) 152, 422
Hin1II CATG 1 cut(s) 394
HinfI GANTC 1 cut(s) 227
HphI GGTGA 3 cut(s) 104, 237, 415
Hpy188I TCNGA 3 cut(s) 50, 223, 335
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 3 cut(s) 70, 104, 382
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 6 cut(s) 70, 121, 134, 143, 308, 353
Lsp1109I GCAGC 1 cut(s) 50
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 72, 106, 384
MboI GATC 3 cut(s) 70, 104, 382
MboII GAAGA 4 cut(s) 159, 162, 165, 226
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 259, 340
MluCI AATT 4 cut(s) 78, 91, 261, 354
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 28, 201
MnlI CCTC 6 cut(s) 52, 190, 217, 228, 285, 370
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 3 cut(s) 70, 104, 382
NlaIII CATG 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 75
PceI AGGCCT 1 cut(s) 422
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 138
Psp124BI GAGCTC 2 cut(s) 259, 340
Psp5II RGGWCCY 1 cut(s) 138
PspPI GGNCC 1 cut(s) 138
PspPPI RGGWCCY 1 cut(s) 138
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SacI GAGCTC 2 cut(s) 259, 340
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 70, 104, 382
Sau96I GGNCC 1 cut(s) 138
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 2 cut(s) 259, 340
SetI ASST 9 cut(s) 89, 140, 182, 213, 259, 277, 295, 340, 376
SinI GGWCC 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 4 cut(s) 78, 91, 261, 354
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 2 cut(s) 96, 401
SstI GAGCTC 2 cut(s) 259, 340
StuI AGGCCT 1 cut(s) 422
TaiI ACGT 1 cut(s) 376
TasI AATT 4 cut(s) 78, 91, 261, 354
TatI WGTACW 1 cut(s) 5
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 3 cut(s) 78, 91, 261
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.