RchiOBHm_Chr2g0161511

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000303
Physical Location & Seq
Forward (+)
77387927 .. 77388523
597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52986

Sequence Viewer

Length: 279 bp
ATGAGTTCTTCATCATCAGCAAGGAGAGCATGGATAGTGGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAGACCAAGGAATCTGCAGGTGGAATTACACAATGAAACTGGTGCAGCAGCAAGCCAAGACCCATCTCAGGTCTTATTCTCAGGCTCATTCAAAACTCTCTTCCTCATCCTCTGCTTTGGTTTCAAGTAAACTCAGAGATGACAAGGCCAAGCATTCTGAGGAGTCTCTCAGAAAAGTCATGTACCTCAGCTGCTGGGGTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

92

Amino Acids

10.23

Weight (kDa)

9.95

Isoelectric Point (pI)

69.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 13 - 91 1.7e-33 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 70, 162, 195
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 2 cut(s) 63, 216
ApeKI GCWGC 4 cut(s) 41, 115, 118, 261
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 4 cut(s) 53, 127, 130, 248
BccI CCATC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 4 cut(s) 42, 116, 119, 262
BlsI GCNGC 4 cut(s) 43, 117, 120, 263
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 270, 271
Bpu10I CCTNAGC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMII CTCAG 6 cut(s) 151, 164, 217, 219, 253, 271
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 53, 127, 130, 248
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 2 cut(s) 65, 218
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 65, 218
BspANI GGCC 2 cut(s) 65, 218
BspCNI CTCAG 6 cut(s) 150, 163, 216, 220, 252, 270
BspLI GGNNCC 2 cut(s) 270, 271
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 6 cut(s) 137, 150, 203, 228, 239, 257
BstF5I GGATG 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 53, 127, 130, 248
BsuRI GGCC 2 cut(s) 65, 218
BtsCI GGATG 1 cut(s) 176
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 30, 250
CviJI RGCY 5 cut(s) 65, 125, 155, 218, 261
CviKI_1 RGCY 5 cut(s) 65, 125, 155, 218, 261
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 6 cut(s) 137, 150, 203, 228, 239, 257
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 33, 253
FaiI YATR 2 cut(s) 31, 251
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 29, 249
Fnu4HI GCNGC 4 cut(s) 42, 116, 119, 262
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 4 cut(s) 42, 116, 119, 262
GluI GCNGC 4 cut(s) 42, 116, 119, 262
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 65, 218
Hin1II CATG 2 cut(s) 33, 253
HinfI GANTC 2 cut(s) 81, 233
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 206, 229, 242
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 87, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 6 cut(s) 137, 150, 203, 228, 239, 257
Hsp92II CATG 2 cut(s) 33, 253
KflI GGGWCCC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 73, 95, 124, 137, 250
Lsp1109I GCAGC 4 cut(s) 53, 127, 130, 248
MboII GAAGA 1 cut(s) 162
MfeI CAATTG 1 cut(s) 274
MluCI AATT 2 cut(s) 94, 274
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 5 cut(s) 55, 184, 190, 223, 266
MspA1I CMGCKG 1 cut(s) 261
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 33, 253
NlaIV GGNNCC 2 cut(s) 270, 271
PaqCI CACCTGC 1 cut(s) 78
PceI AGGCCT 1 cut(s) 65
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 4 cut(s) 43, 117, 120, 263
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 270, 271
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 261
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 4 cut(s) 42, 116, 119, 262
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 242
SetI ASST 4 cut(s) 92, 143, 258, 263
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 269
Sse9I AATT 2 cut(s) 94, 274
SseBI AGGCCT 1 cut(s) 65
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 76
TasI AATT 2 cut(s) 94, 274
TfiI GAWTC 1 cut(s) 81
TseI GCWGC 4 cut(s) 41, 115, 118, 261
TspDTI ATGAA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.