Rh2AG556200

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000303
Physical Location & Seq
Forward (+)
78667882 .. 78677126
9245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG556200.1

Sequence Viewer

Length: 297 bp
ATGCTTAATGCACAATTTGCTACTACTCTACTAGCAAATAGGGCTTGGATAGCGGTAGCCAGTGTGGGAGTTGTGGAGGCCTTGAAAGACCAAGTACGCATATGCAGGTGGAATCACACAATGAGACTGATGCAGCAACATGCCAAGAACAACCTCGGGTCTTATTCTCAGGCGCACCACAAACTCTCTTCCTCATACTCTGCTTTGTTATCAAGGAAACTCAGAGATGACAAGCCAAAGCAATCTGAGGAGTCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

98

Amino Acids

11.2

Weight (kDa)

10.09

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 20 - 97 4.2e-27 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 96
AciI CCGC 1 cut(s) 53
AfaI GTAC 2 cut(s) 96, 272
AgsI TTSAA 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 2 cut(s) 32, 295
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 288, 289
BmsI GCATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 182, 235, 237
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 155
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 3 cut(s) 181, 234, 238
BspLI GGNNCC 2 cut(s) 288, 289
BspMI ACCTGC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 193
BstAPI GCANNNNNTGC 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 168, 221, 246
BstHHI GCGC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 17, 41, 50
BstNSI RCATGY 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 95, 271
CviAII CATG 2 cut(s) 140, 268
CviJI RGCY 4 cut(s) 44, 59, 80, 235
CviKI_1 RGCY 4 cut(s) 44, 59, 80, 235
CviQI GTAC 2 cut(s) 95, 271
DdeI CTNAG 3 cut(s) 168, 221, 246
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 287
FaeI CATG 2 cut(s) 143, 271
FaiI YATR 6 cut(s) 101, 103, 141, 196, 257, 269
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 139, 267
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 32, 295
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 80
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 143, 271
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 2 cut(s) 112, 251
Hpy188I TCNGA 2 cut(s) 224, 247
HpyCH4V TGCA 3 cut(s) 11, 105, 133
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 41, 50
HpyF3I CTNAG 3 cut(s) 168, 221, 246
Hsp92II CATG 2 cut(s) 143, 271
HspAI GCGC 1 cut(s) 173
KflI GGGWCCC 1 cut(s) 287
LpnPI CCDG 3 cut(s) 73, 91, 155
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 32, 295
MboII GAAGA 1 cut(s) 180
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 6 cut(s) 70, 164, 202, 241, 252, 284
MseI TTAA 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 17, 41, 50
NdeI CATATG 1 cut(s) 101
NlaIII CATG 2 cut(s) 143, 271
NlaIV GGNNCC 2 cut(s) 288, 289
NspI RCATGY 1 cut(s) 143
PaqCI CACCTGC 1 cut(s) 96
PceI AGGCCT 1 cut(s) 80
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 288, 289
PspPI GGNCC 1 cut(s) 287
PspPPI RGGWCCY 1 cut(s) 287
RsaI GTAC 2 cut(s) 96, 272
RsaNI GTAC 2 cut(s) 95, 271
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 260
SetI ASST 3 cut(s) 110, 156, 276
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 287
Sse9I AATT 1 cut(s) 14
SseBI AGGCCT 1 cut(s) 80
SsiI CCGC 1 cut(s) 53
SspMI CTAG 2 cut(s) 32, 295
StuI AGGCCT 1 cut(s) 80
TasI AATT 1 cut(s) 14
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 133
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 143
XspI CTAG 2 cut(s) 32, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.