Rroxscaffold_2G00088770

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000303
Physical Location & Seq
Reverse (-)
10691546 .. 10691830
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088770.1

Sequence Viewer

Length: 285 bp
ATGAGTTCTTCATCATCGGTAGCAAACGGGGCTTGGATAGCGGCGGCCAGTGTGGGAGTTGTGGAGGTCTTGAAAGACCAAGTAGGCATATGCAGGTGGAATCACACAATGAGACCGATGCAGCAACATGCCAAGAACAACATCGGATCTTATGCTCGGGCGCACCACAAACTCTCTTCTTCATACTCTGCTTTGTTATCAAGGAAACTCGGAGATGACAAGCCAAAGCAATCCGAGGAGCCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

94

Amino Acids

10.37

Weight (kDa)

9.73

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 15 - 93 3.7e-27 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 84
AciI CCGC 2 cut(s) 41, 44
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 84
BisI GCNGC 3 cut(s) 42, 45, 122
BlsI GCNGC 3 cut(s) 43, 46, 123
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 240, 276, 277
BmsI GCATC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 156
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 2 cut(s) 41, 44
BspANI GGCC 1 cut(s) 47
BspLI GGNNCC 3 cut(s) 240, 276, 277
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 181
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNSI RCATGY 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 55
BveI ACCTGC 1 cut(s) 84
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 128, 256
CviJI RGCY 4 cut(s) 32, 47, 223, 241
CviKI_1 RGCY 4 cut(s) 32, 47, 223, 241
CviQI GTAC 1 cut(s) 259
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 275
FaeI CATG 2 cut(s) 131, 259
FaiI YATR 7 cut(s) 89, 91, 129, 153, 184, 245, 257
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 127, 255
FauNDI CATATG 1 cut(s) 89
Fnu4HI GCNGC 3 cut(s) 42, 45, 122
Fsp4HI GCNGC 3 cut(s) 42, 45, 122
FspBI CTAG 1 cut(s) 283
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 42, 45, 122
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 131, 259
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 146, 212, 235
Hpy188III TCNNGA 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 93, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
Hsp92II CATG 2 cut(s) 131, 259
HspAI GCGC 1 cut(s) 161
KflI GGGWCCC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 2 cut(s) 61, 79
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 283
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 168, 171
MflI RGATCY 1 cut(s) 146
MnlI CCTC 4 cut(s) 58, 229, 240, 272
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NdeI CATATG 1 cut(s) 89
NdeII GATC 1 cut(s) 146
NlaIII CATG 2 cut(s) 131, 259
NlaIV GGNNCC 3 cut(s) 240, 276, 277
NspI RCATGY 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 3 cut(s) 43, 46, 123
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 240, 276, 277
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 3 cut(s) 42, 45, 122
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 275
SetI ASST 3 cut(s) 69, 98, 264
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 1 cut(s) 275
SsiI CCGC 2 cut(s) 41, 44
SspMI CTAG 1 cut(s) 283
TaqII GACCGA 1 cut(s) 130
TauI GCSGC 2 cut(s) 44, 47
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 275
XceI RCATGY 1 cut(s) 131
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.