pycom03g16710

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000303
Physical Location & Seq
Forward (+)
17884868 .. 17885134
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16710.1

Sequence Viewer

Length: 267 bp
ATGAGTGCAGCCTGCCGAGCTTGGGTGGTGGCAGCAAGCATTGGAGCAGTGGAGGCACTGAAAGACCAAGGAGTCTGCAGGTGGAATGGGGTTCTGAGATCGGTCCACCAGCACGTCAAGTACAACATCAGATCCTATTCCCAAGCCAAAAACCTGTCCGACTCATCGTCTTCTGCAATTTCTATGTCGATGCAGAGATCACAGGAGGAGAAGGTGAAAAAAGTCATGGAGTTGGTTTGCTGGGGTCCCAATACTGTTAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

9.66

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 83 2.7e-27 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 261
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 115
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwI GGATC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 8, 32
ApoI RAATTY 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 103, 245
AsuHPI GGTGA 1 cut(s) 226
AvaII GGWCC 2 cut(s) 103, 245
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 20, 44
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 2 cut(s) 9, 33
BlsI GCNGC 2 cut(s) 10, 34
Bme18I GGWCC 2 cut(s) 103, 245
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 103, 245
BmiI GGNNCC 2 cut(s) 246, 247
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 20, 44
BseYI CCCAGC 1 cut(s) 240
BsgI GTGCAG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 98, 131, 197
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 246, 247
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 3 cut(s) 98, 131, 197
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 13, 37
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 3 cut(s) 101, 134, 200
BstMBI GATC 3 cut(s) 98, 131, 197
BstMWI GCNNNNNNNGC 2 cut(s) 17, 53
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 20, 44
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BtrI CACGTC 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 56
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 13, 37
Cfr13I GGNCC 2 cut(s) 103, 245
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 11, 20, 146
CviKI_1 RGCY 3 cut(s) 11, 20, 146
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 100, 133, 199
DpnII GATC 3 cut(s) 98, 131, 197
DrdI GACNNNNNNGTC 1 cut(s) 71
DriI GACNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 103, 245
EcoO109I RGGNCCY 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 185, 227
FaqI GGGAC 1 cut(s) 231
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 9, 33
Fsp4HI GCNGC 2 cut(s) 9, 33
GluI GCNGC 2 cut(s) 9, 33
GsaI CCCAGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 229
HinfI GANTC 2 cut(s) 72, 161
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 96, 131, 160
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 4 cut(s) 8, 78, 176, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 53
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 229
KflI GGGWCCC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 98, 131, 197
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 25, 64, 122, 167, 188, 226
Lsp1109I GCAGC 2 cut(s) 20, 44
LweI GCATC 1 cut(s) 180
MaeII ACGT 1 cut(s) 114
MalI GATC 3 cut(s) 100, 133, 199
MboI GATC 3 cut(s) 98, 131, 197
MboII GAAGA 1 cut(s) 162
MflI RGATCY 1 cut(s) 131
MluCI AATT 2 cut(s) 177, 261
MlyI GAGTC 2 cut(s) 81, 155
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 2 cut(s) 46, 199
MwoI GCNNNNNNNGC 2 cut(s) 17, 53
NdeII GATC 3 cut(s) 98, 131, 197
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 246, 247
NmeAIII GCCGAG 1 cut(s) 41
PaqCI CACCTGC 1 cut(s) 69
PkrI GCNGC 2 cut(s) 10, 34
PleI GAGTC 2 cut(s) 80, 155
PpsI GAGTC 2 cut(s) 80, 155
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 246, 247
PspPI GGNCC 2 cut(s) 103, 245
PspPPI RGGWCCY 1 cut(s) 245
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 2 cut(s) 9, 33
Sau3AI GATC 3 cut(s) 98, 131, 197
Sau96I GGNCC 2 cut(s) 103, 245
SchI GAGTC 2 cut(s) 81, 155
SetI ASST 5 cut(s) 22, 83, 117, 156, 216
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 2 cut(s) 103, 245
Sse9I AATT 2 cut(s) 177, 261
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 188
TaqII GACCGA 1 cut(s) 91
TasI AATT 2 cut(s) 177, 261
TatI WGTACW 1 cut(s) 120
TscAI CASTG 2 cut(s) 54, 63
TseI GCWGC 2 cut(s) 8, 32
TspRI CASTG 2 cut(s) 54, 63
VpaK11BI GGWCC 2 cut(s) 103, 245
XapI RAATTY 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.