MD17G1085400.v1.1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
7018315 .. 7020448
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1085400.v1.1.491

Sequence Viewer

Length: 432 bp
ATGCAAGGAAGAGGAAGCACTAATAGAGACCAAGCGTCTAAAGGCAAGGCATGTCGCAAGGAATTGGCCACAGAATTTTCTGGTGCTGTAAACAACAAGAATAGTACCAGCAGCTGTGATCATCAGTGCAGGCTTAAACAGCAGGCTGAGGAATCTCTCCGGACTATGTGTGGAACAAGAGGAGCGTGGATAGTAGCGGCTAGCGTTGGAGCTGTTGAGGCTTTGAAAGATCAAGGTTTCGGCAGATGGAGTTACACCATGAGATCTGTTCACCAGCATGCCAAGAGCAATGTGAGATCTTTCTTGCAAGCAAAGGAACTATCGCCTTCGTCTTCTGCAATGGTTTTGAACAAACTGAAATCCGAAAAGAAGAACCAAGCAGCTGAGGATTCTCTAAGAAAAGTCATGTACCTGAGCTGCTGGGGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

144

Amino Acids

15.73

Weight (kDa)

9.78

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 65 - 143 3.9e-31 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 159
AciI CCGC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 2 cut(s) 106, 410
AgsI TTSAA 2 cut(s) 226, 349
AhdI GACNNNNNGTC 1 cut(s) 34
AluBI AGCT 4 cut(s) 114, 212, 383, 417
AluI AGCT 4 cut(s) 114, 212, 383, 417
Alw26I GTCTC 1 cut(s) 21
AlwNI CAGNNNCTG 1 cut(s) 114
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 2 cut(s) 66, 425
ApeKI GCWGC 3 cut(s) 111, 380, 417
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 263
AsuNHI GCTAGC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 324
BbvCI CCTCAGC 2 cut(s) 147, 384
BbvI GCAGC 3 cut(s) 123, 392, 404
BccI CCATC 1 cut(s) 240
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 201
BglII AGATCT 2 cut(s) 263, 296
BisI GCNGC 4 cut(s) 112, 198, 381, 418
BlsI GCNGC 4 cut(s) 113, 199, 382, 419
BmeRI GACNNNNNGTC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 426
BmtI GCTAGC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 3 cut(s) 147, 384, 413
BsaI GGTCTC 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 295, 345
BseAI TCCGGA 1 cut(s) 159
BseMI GCAATG 2 cut(s) 295, 345
BseMII CTCAG 3 cut(s) 138, 375, 404
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 123, 392, 404
BseYI CCCAGC 1 cut(s) 420
BsgI GTGCAG 1 cut(s) 148
BshFI GGCC 2 cut(s) 68, 427
BsiSI CCGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 2 cut(s) 68, 427
Bso31I GGTCTC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 118, 229, 263, 296
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 68, 427
BspCNI CTCAG 3 cut(s) 139, 376, 405
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 426
BspOI GCTAGC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 295, 345
BssMI GATC 4 cut(s) 118, 229, 263, 296
Bst6I CTCTTC 1 cut(s) 4
BstC8I GCNNGC 5 cut(s) 131, 144, 202, 279, 309
BstDEI CTNAG 4 cut(s) 147, 384, 395, 413
BstKTI GATC 4 cut(s) 121, 232, 266, 299
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 4 cut(s) 118, 229, 263, 296
BstMWI GCNNNNNNNGC 2 cut(s) 139, 218
BstNSI RCATGY 2 cut(s) 54, 281
BstV1I GCAGC 3 cut(s) 123, 392, 404
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 263, 296
BstYI RGATCY 2 cut(s) 263, 296
BsuRI GGCC 2 cut(s) 68, 427
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 5 cut(s) 131, 144, 202, 279, 309
CaiI CAGNNNCTG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 105, 409
CviAII CATG 4 cut(s) 51, 259, 278, 406
CviQI GTAC 2 cut(s) 105, 409
DdeI CTNAG 4 cut(s) 147, 384, 395, 413
DpnI GATC 4 cut(s) 120, 231, 265, 298
DpnII GATC 4 cut(s) 118, 229, 263, 296
DriI GACNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 4
Eam1105I GACNNNNNGTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 4
Eco31I GGTCTC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 425
FaeI CATG 4 cut(s) 54, 262, 281, 409
FaiI YATR 5 cut(s) 52, 167, 260, 279, 407
FatI CATG 4 cut(s) 50, 258, 277, 405
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 112, 198, 381, 418
Fsp4HI GCNGC 4 cut(s) 112, 198, 381, 418
FspBI CTAG 1 cut(s) 201
GluI GCNGC 4 cut(s) 112, 198, 381, 418
GsaI CCCAGC 1 cut(s) 424
HaeIII GGCC 2 cut(s) 68, 427
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 24
Hin1II CATG 4 cut(s) 54, 262, 281, 409
HinfI GANTC 2 cut(s) 152, 389
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 91, 271
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 2 cut(s) 91, 271
HpyAV CCTTC 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 4, 129, 307, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 218
HpyF3I CTNAG 4 cut(s) 147, 384, 395, 413
Hsp92II CATG 4 cut(s) 54, 262, 281, 409
Kpn2I TCCGGA 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 118, 229, 263, 296
LmnI GCTCC 2 cut(s) 182, 209
LpnPI CCDG 8 cut(s) 66, 115, 121, 128, 173, 287, 406, 425
Lsp1109I GCAGC 3 cut(s) 123, 392, 404
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 251
MalI GATC 4 cut(s) 120, 231, 265, 298
MboI GATC 4 cut(s) 118, 229, 263, 296
MboII GAAGA 3 cut(s) 21, 324, 382
MflI RGATCY 2 cut(s) 263, 296
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 2 cut(s) 62, 74
MluNI TGGCCA 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 5, 142, 173, 211, 379
Mox20I TGGCCA 1 cut(s) 68
MroI TCCGGA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 68
MseI TTAA 2 cut(s) 135, 430
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 114, 383
MspI CCGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 139, 218
NdeII GATC 4 cut(s) 118, 229, 263, 296
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 4 cut(s) 54, 262, 281, 409
NlaIV GGNNCC 1 cut(s) 426
NspI RCATGY 2 cut(s) 54, 281
PaeI GCATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 152, 389
PkrI GCNGC 4 cut(s) 113, 199, 382, 419
PspFI CCCAGC 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 114
PsuI RGATCY 2 cut(s) 263, 296
PvuII CAGCTG 2 cut(s) 114, 383
RsaI GTAC 2 cut(s) 106, 410
RsaNI GTAC 2 cut(s) 105, 409
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 135, 430
SatI GCNGC 4 cut(s) 112, 198, 381, 418
Sau3AI GATC 4 cut(s) 118, 229, 263, 296
Sau96I GGNCC 1 cut(s) 425
SetI ASST 6 cut(s) 116, 214, 238, 385, 414, 419
SmiMI CAYNNNNRTG 1 cut(s) 276
SphI GCATGC 1 cut(s) 281
Sse9I AATT 2 cut(s) 62, 74
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 201
TasI AATT 2 cut(s) 62, 74
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 152, 389
Tru1I TTAA 2 cut(s) 135, 430
Tru9I TTAA 2 cut(s) 135, 430
TscAI CASTG 1 cut(s) 131
TseI GCWGC 3 cut(s) 111, 380, 417
TspRI CASTG 1 cut(s) 131
XapI RAATTY 1 cut(s) 74
XceI RCATGY 2 cut(s) 54, 281
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.