Rroxscaffold_2G00088760

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000303
Physical Location & Seq
Reverse (-)
10686179 .. 10686927
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088760.1

Sequence Viewer

Length: 273 bp
ATGAGTACTACTTCAAGAACAAGCAAGGCTATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCACTGAAGGATCAAGGAATTTGCAGGTGGAATTCCGCAATAAGATCTATTCACCAACAAGCCAAGACCCAGTTCAGGTCCTTTTCTCAGGCCAACACCAAGTTATCTTCTTCTTCAACCTCTGCTTTGAGCAGAGTTAGAGATGAGAAGCTGAAGAAGTCGGAGGAGTCCTTGAGGACAGTCATGTACCTAAGCTGCTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

90

Amino Acids

9.93

Weight (kDa)

10.22

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 89 9.1e-35 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 75
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 2 cut(s) 78, 91
AcuI CTGAAG 2 cut(s) 86, 233
AfaI GTAC 2 cut(s) 7, 248
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 2 cut(s) 15, 177
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 2 cut(s) 211, 255
AluI AGCT 2 cut(s) 211, 255
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 38, 255
ApoI RAATTY 2 cut(s) 78, 91
AspS9I GGNCC 2 cut(s) 138, 263
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 138, 263
BbvI GCAGC 2 cut(s) 50, 242
BfuAI ACCTGC 1 cut(s) 75
BglII AGATCT 1 cut(s) 104
BisI GCNGC 2 cut(s) 39, 256
BlsI GCNGC 2 cut(s) 40, 257
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 138, 263
BmgT120I GGNCC 2 cut(s) 138, 263
BmiI GGNNCC 2 cut(s) 264, 265
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 50, 242
BseYI CCCAGC 1 cut(s) 258
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 70, 104
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 264, 265
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 130
BssMI GATC 2 cut(s) 70, 104
Bst4CI ACNGT 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 147, 251
BstKTI GATC 2 cut(s) 73, 107
BstMBI GATC 2 cut(s) 70, 104
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 50, 242
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 138, 263
Csp6I GTAC 2 cut(s) 6, 247
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 29, 122, 152, 211, 255
CviKI_1 RGCY 5 cut(s) 29, 122, 152, 211, 255
CviQI GTAC 2 cut(s) 6, 247
DdeI CTNAG 2 cut(s) 147, 251
DpnI GATC 2 cut(s) 72, 106
DpnII GATC 2 cut(s) 70, 104
Eco47I GGWCC 2 cut(s) 138, 263
Eco57I CTGAAG 2 cut(s) 86, 233
EcoO109I RGGNCCY 2 cut(s) 138, 263
EcoRI GAATTC 1 cut(s) 91
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FaqI GGGAC 1 cut(s) 249
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 39, 256
Fsp4HI GCNGC 2 cut(s) 39, 256
GluI GCNGC 2 cut(s) 39, 256
GsaI CCCAGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 1 cut(s) 247
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 147, 251
Hsp92II CATG 1 cut(s) 247
KflI GGGWCCC 1 cut(s) 263
Kzo9I GATC 2 cut(s) 70, 104
LpnPI CCDG 5 cut(s) 70, 121, 134, 143, 244
Lsp1109I GCAGC 2 cut(s) 50, 242
MalI GATC 2 cut(s) 72, 106
MboI GATC 2 cut(s) 70, 104
MboII GAAGA 4 cut(s) 159, 162, 165, 226
MflI RGATCY 1 cut(s) 104
MluCI AATT 2 cut(s) 78, 91
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 28, 201
MnlI CCTC 4 cut(s) 52, 190, 217, 228
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 70, 104
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 264, 265
PaqCI CACCTGC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 40, 257
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 2 cut(s) 138, 263
Psp5II RGGWCCY 2 cut(s) 138, 263
PspFI CCCAGC 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 264, 265
PspPI GGNCC 2 cut(s) 138, 263
PspPPI RGGWCCY 2 cut(s) 138, 263
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 2 cut(s) 7, 248
RsaNI GTAC 2 cut(s) 6, 247
SatI GCNGC 2 cut(s) 39, 256
Sau3AI GATC 2 cut(s) 70, 104
Sau96I GGNCC 2 cut(s) 138, 263
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 236
SetI ASST 6 cut(s) 89, 140, 182, 213, 252, 257
SinI GGWCC 2 cut(s) 138, 263
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 78, 91
SsiI CCGC 1 cut(s) 96
TaaI ACNGT 1 cut(s) 241
TasI AATT 2 cut(s) 78, 91
TatI WGTACW 1 cut(s) 5
TscAI CASTG 1 cut(s) 69
TseI GCWGC 2 cut(s) 38, 255
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 138, 263
XapI RAATTY 2 cut(s) 78, 91
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.