Rw2G046000

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000303
Physical Location & Seq
Forward (+)
73174157 .. 73174441
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046000.1

Sequence Viewer

Length: 285 bp
ATGAGTTCTTCATCATCAGTAGCAAACAGGGCTTGGGTAGCTGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAAGAGACCAAGGGATCTGCAGGTGGAGTCAAACAATGAGATTGGCGCAACAACGTGCCAAGACTCACCTCAGATCTTTTTCTCAGGCGAACCAGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGAAAACTGAGAGATGACAAGCCGAAGCAGTCTGAGGAATCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

94

Amino Acids

10.62

Weight (kDa)

10.92

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 15 - 93 5.9e-26 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 95
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 2 cut(s) 73, 201
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 72, 163
AlwI GGATC 1 cut(s) 95
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 41, 44
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 28, 56
BcoDI GTCTC 2 cut(s) 72, 163
BfmI CTRYAG 2 cut(s) 42, 91
BfuAI ACCTGC 1 cut(s) 84
BglII AGATCT 1 cut(s) 146
BisI GCNGC 2 cut(s) 42, 45
BlsI GCNGC 2 cut(s) 43, 46
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 276, 277
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 82
BseMII CTCAG 4 cut(s) 157, 170, 200, 225
BseXI GCAGC 2 cut(s) 28, 56
BshFI GGCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 72, 163
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 87, 146
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 4 cut(s) 156, 169, 201, 226
BspLI GGNNCC 2 cut(s) 276, 277
BspMAI CTGCAG 2 cut(s) 46, 95
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 87, 146
BssT1I CCWWGG 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 181
BstDEI CTNAG 4 cut(s) 143, 156, 209, 234
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 90, 149
BstMAI GTCTC 2 cut(s) 72, 163
BstMBI GATC 2 cut(s) 87, 146
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstSFI CTRYAG 2 cut(s) 42, 91
BstV1I GCAGC 2 cut(s) 28, 56
BstX2I RGATCY 2 cut(s) 87, 146
BstYI RGATCY 2 cut(s) 87, 146
BsuRI GGCC 1 cut(s) 68
BveI ACCTGC 1 cut(s) 84
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 256
CviJI RGCY 4 cut(s) 32, 41, 68, 223
CviKI_1 RGCY 4 cut(s) 32, 41, 68, 223
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 143, 156, 209, 234
DpnI GATC 2 cut(s) 89, 148
DpnII GATC 2 cut(s) 87, 146
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 259
FaiI YATR 3 cut(s) 184, 245, 257
FaqI GGGAC 1 cut(s) 261
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 42, 45
Fsp4HI GCNGC 2 cut(s) 42, 45
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 42, 45
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 4 cut(s) 100, 136, 171, 239
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 146, 235
Hpy188III TCNNGA 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 44, 93
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 4 cut(s) 143, 156, 209, 234
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 119
KflI GGGWCCC 1 cut(s) 275
Kzo9I GATC 2 cut(s) 87, 146
LpnPI CCDG 4 cut(s) 13, 79, 143, 179
Lsp1109I GCAGC 2 cut(s) 28, 56
MaeII ACGT 1 cut(s) 127
MalI GATC 2 cut(s) 89, 148
MboI GATC 2 cut(s) 87, 146
MboII GAAGA 1 cut(s) 168
MflI RGATCY 2 cut(s) 87, 146
MlyI GAGTC 3 cut(s) 109, 130, 165
MnlI CCTC 6 cut(s) 58, 152, 190, 229, 240, 272
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NdeII GATC 2 cut(s) 87, 146
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 276, 277
PaqCI CACCTGC 1 cut(s) 84
PceI AGGCCT 1 cut(s) 68
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 43, 46
PleI GAGTC 3 cut(s) 108, 130, 165
PpsI GAGTC 3 cut(s) 108, 130, 165
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 276, 277
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PstI CTGCAG 2 cut(s) 46, 95
PsuI RGATCY 2 cut(s) 87, 146
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 2 cut(s) 42, 45
Sau3AI GATC 2 cut(s) 87, 146
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 3 cut(s) 109, 130, 165
SetI ASST 5 cut(s) 43, 98, 130, 144, 264
SfcI CTRYAG 2 cut(s) 42, 91
SinI GGWCC 1 cut(s) 275
SseBI AGGCCT 1 cut(s) 68
StuI AGGCCT 1 cut(s) 68
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 239
TseI GCWGC 2 cut(s) 41, 44
VpaK11BI GGWCC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.