Prupe.3G229700_v2.0.a1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000303
Physical Location & Seq
Forward (+)
22784215 .. 22785316
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G229700.1

Sequence Viewer

Length: 387 bp
ATGTCTTCCAGCTACTTTATCACCTACTTTGATTTCACGTTACTCATTATCATCTTCTCCATCAATAATACACTCAAAACATTCACATTCACAGCTGAGGAGTTCAAAAGATTTAAGAGAGAAATAGTAGAGAGGAGAAAAGAAATCATAATCATGATGTCAAGTACAAGTGTTGGAGTGGAGGCATTGAAGGATCAAGGGATATGCAGATGGAACTCTGCTCTAAGATCTGTGCACCAACAAGCCAAAACCCAACTCAGGTCATTTTCTCAGCTCTCATCTTCTTCTGCTTCAGCTGCTTTCAGTACAGCCGGAGACGAAAAGCTGAAGAAATCAGAGGAGTCTTTGAGGACAGTCATGTACTTGAGTTGCTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

129

Amino Acids

14.63

Weight (kDa)

9.43

Isoelectric Point (pI)

65.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 201
AcuI CTGAAG 2 cut(s) 276, 347
AfaI GTAC 3 cut(s) 166, 307, 362
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 2 cut(s) 106, 190
AluBI AGCT 5 cut(s) 12, 95, 274, 296, 325
AluI AGCT 5 cut(s) 12, 95, 274, 296, 325
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 309
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 68, 204
BcoDI GTCTC 1 cut(s) 309
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 378, 379
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 87, 271, 284
BseRI GAGGAG 3 cut(s) 113, 148, 353
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 193, 227
BspCNI CTCAG 3 cut(s) 88, 270, 283
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 378, 379
BspPI GGATC 1 cut(s) 201
BssMI GATC 2 cut(s) 193, 227
Bst4CI ACNGT 1 cut(s) 355
BstDEI CTNAG 4 cut(s) 96, 224, 257, 270
BstKTI GATC 2 cut(s) 196, 230
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 2 cut(s) 193, 227
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
CciI TCATGA 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 165, 306, 361
CviAII CATG 2 cut(s) 154, 358
CviJI RGCY 7 cut(s) 12, 95, 245, 274, 296, 311, 325
CviKI_1 RGCY 7 cut(s) 12, 95, 245, 274, 296, 311, 325
CviQI GTAC 3 cut(s) 165, 306, 361
DdeI CTNAG 4 cut(s) 96, 224, 257, 270
DpnI GATC 2 cut(s) 195, 229
DpnII GATC 2 cut(s) 193, 227
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 276, 347
EcoO109I RGGNCCY 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 2 cut(s) 157, 361
FaiI YATR 4 cut(s) 149, 155, 205, 359
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 153, 357
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 297
GsaI CCCAGC 1 cut(s) 376
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 157, 361
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 207, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 4 cut(s) 96, 224, 257, 270
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 157, 361
KflI GGGWCCC 1 cut(s) 377
Kzo9I GATC 2 cut(s) 193, 227
LpnPI CCDG 4 cut(s) 22, 244, 325, 358
Lsp1109I GCAGC 1 cut(s) 283
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 39
MalI GATC 2 cut(s) 195, 229
MboI GATC 2 cut(s) 193, 227
MboII GAAGA 4 cut(s) 46, 273, 276, 340
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 5 cut(s) 91, 126, 175, 331, 342
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 95, 296
MspI CCGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 193, 227
NlaIII CATG 2 cut(s) 157, 361
NlaIV GGNNCC 2 cut(s) 378, 379
PagI TCATGA 1 cut(s) 153
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 378, 379
PspPI GGNCC 1 cut(s) 377
PspPPI RGGWCCY 1 cut(s) 377
PsuI RGATCY 1 cut(s) 227
PvuII CAGCTG 2 cut(s) 95, 296
RsaI GTAC 3 cut(s) 166, 307, 362
RsaNI GTAC 3 cut(s) 165, 306, 361
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 193, 227
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 237
SetI ASST 8 cut(s) 14, 26, 41, 97, 263, 276, 298, 327
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 41
TatI WGTACW 3 cut(s) 164, 305, 360
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 296
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.