Prupe.3G230000_v2.0.a1

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000303
Physical Location & Seq
Forward (+)
22789893 .. 22790274
382 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230000.1

Sequence Viewer

Length: 279 bp
ATGATGAGTGCAGCAACAGCAAGTAGGGCTTGGGTTGTGGCAGCCACAGTTGGAGTTGTGGAAGTGTTGAAAGACCAAGGGTTGTGCAGATGGAACTATCCCATGAGACTGGTGCACCAGCAAGCCAAGAACCATCTCAGGTCTTTTTCTCAGGCCAAGAAGCTGTCTTCTTCTTCTTCTGCCATGGCTTCAAGCATGATCATGAGAGAAGAGAAAATAAAGCAGTCAGAGGAGTCTATGAGGAAAGTGATGTATCTTAACTCTTGGGGTCCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

93

Amino Acids

10.36

Weight (kDa)

10.1

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 70, 192
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 100
Alw44I GTGCAC 1 cut(s) 113
AoxI GGCC 1 cut(s) 153
ApaLI GTGCAC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 11, 41
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 23, 53
BccI CCATC 2 cut(s) 84, 141
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 100
BisI GCNGC 2 cut(s) 12, 42
BlsI GCNGC 2 cut(s) 13, 43
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 270, 271
BpiI GAAGAC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 76, 183
Bse1I ACTGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 76, 183
BseMII CTCAG 2 cut(s) 151, 164
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 2 cut(s) 23, 53
BsgI GTGCAG 2 cut(s) 30, 106
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 117
BslFI GGGAC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 150, 163
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 270, 271
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 76, 183
BssMI GATC 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 76, 183
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 137, 150
BstDSI CCRYGG 1 cut(s) 183
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 17, 26
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 23, 53
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 109
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 4 cut(s) 103, 184, 196, 202
CviJI RGCY 6 cut(s) 29, 44, 125, 155, 163, 188
CviKI_1 RGCY 6 cut(s) 29, 44, 125, 155, 163, 188
DdeI CTNAG 2 cut(s) 137, 150
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 76, 183
Eco47I GGWCC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 76, 183
ErhI CCWWGG 2 cut(s) 76, 183
FaeI CATG 4 cut(s) 106, 187, 199, 205
FaiI YATR 5 cut(s) 104, 185, 197, 203, 239
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 255
FatI CATG 4 cut(s) 102, 183, 195, 201
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 12, 42
Fsp4HI GCNGC 2 cut(s) 12, 42
GluI GCNGC 2 cut(s) 12, 42
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 4 cut(s) 106, 187, 199, 205
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 11, 87, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 26
HpyF3I CTNAG 2 cut(s) 137, 150
Hsp92II CATG 4 cut(s) 106, 187, 199, 205
KflI GGGWCCC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 4 cut(s) 95, 124, 131, 137
Lsp1109I GCAGC 2 cut(s) 23, 53
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 5 cut(s) 159, 162, 165, 168, 221
MhlI GDGCHC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 223, 234
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 17, 26
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 198
NlaIII CATG 4 cut(s) 106, 187, 199, 205
NlaIV GGNNCC 2 cut(s) 270, 271
PagI TCATGA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 13, 43
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 270, 271
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 12, 42
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 117
SetI ASST 2 cut(s) 143, 165
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 76, 183
TaaI ACNGT 1 cut(s) 49
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 2 cut(s) 11, 41
VneI GTGCAC 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.