Prupe.3G229300_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000303
Physical Location & Seq
Forward (+)
22768670 .. 22773777
5108 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G229300.1

Sequence Viewer

Length: 237 bp
ATGTGTGCAACAAGAGGAGCTTGGATCGCAGCGGTTAGTGTTGGAGCTGTTGAGGCTTTGAAAGATCAAGGCTTCTGCAGATGGAGTTATACCATGAGGTCTTTGTGTAAAATAGCCAAGGAACTCTCTTCTTCTTCTTCTGCTATGGTTTTGAACAAAATGAATTCTGAACAGAAGAACCAAGCTGAGGATTCTCTAAGAAAAGTCATGTACTTGAGCTGTTGGGGTCCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

79

Amino Acids

8.67

Weight (kDa)

9.05

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 61, 154
AluBI AGCT 4 cut(s) 20, 47, 185, 219
AluI AGCT 4 cut(s) 20, 47, 185, 219
AlwI GGATC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 187
Bsp143I GATC 2 cut(s) 24, 64
BspACI CCGC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 24, 64
BssT1I CCWWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 186, 197
BstKTI GATC 2 cut(s) 27, 67
BstMBI GATC 2 cut(s) 24, 64
BstMWI GCNNNNNNNGC 2 cut(s) 26, 53
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 94, 208
CviJI RGCY 7 cut(s) 20, 47, 56, 72, 116, 185, 219
CviKI_1 RGCY 7 cut(s) 20, 47, 56, 72, 116, 185, 219
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 186, 197
DpnI GATC 2 cut(s) 26, 66
DpnII GATC 2 cut(s) 24, 64
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 97, 211
FaiI YATR 4 cut(s) 90, 95, 146, 209
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 2 cut(s) 93, 207
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
Hin1II CATG 2 cut(s) 97, 211
HinfI GANTC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 8, 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 53
HpyF3I CTNAG 2 cut(s) 186, 197
Hsp92II CATG 2 cut(s) 97, 211
Kzo9I GATC 2 cut(s) 24, 64
LmnI GCTCC 2 cut(s) 17, 44
Lsp1109I GCAGC 1 cut(s) 41
MalI GATC 2 cut(s) 26, 66
MboI GATC 2 cut(s) 24, 64
MboII GAAGA 5 cut(s) 120, 123, 126, 129, 187
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 8, 46, 90, 181
MspA1I CMGCKG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 26, 53
NdeII GATC 2 cut(s) 24, 64
NlaIII CATG 2 cut(s) 97, 211
NlaIV GGNNCC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 227
PspPPI RGGWCCY 1 cut(s) 227
PstI CTGCAG 1 cut(s) 80
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 24, 64
Sau96I GGNCC 1 cut(s) 227
SetI ASST 5 cut(s) 22, 49, 101, 187, 221
SfcI CTRYAG 1 cut(s) 76
SgeI CNNG 8 cut(s) 24, 33, 80, 106, 130, 194, 220, 226
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 32
StyI CCWWGG 1 cut(s) 117
TasI AATT 1 cut(s) 163
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 191
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.