Rh2BG569200

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000303
Physical Location & Seq
Forward (+)
78428067 .. 78428522
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG569200.1

Sequence Viewer

Length: 456 bp
ATGGTTTTTTCAATATTTTATCTACTCAATTATGCAACTCGTACTATCACTCCCTCTCTACAAAAGCAAAGCCATCTCACCCCATTTGCTCAAACATCCATCAAAGCTTTGCTTATTAGCCTCAAACATTCACACTTTCGATTCTATTGGAAGATCAAGATCATCAACAATATGAGTTCTTCATCATCAGTAGCAAACAGGGCTTGGGTAGCTGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAAGAGACCAAGGGATCTGCAGGTGGAGTCAAACAATGAGATTGGCGCAACAACGTGCCAAGACTCACCTCAGATCTTTTTCTCAGGCGAACCAGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGAAAACTGAGAGATGACAAGCCGAAGCAGTCTGAGGAATCTATGAGGAATGTCATGTACCTCAACTCTTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

151

Amino Acids

17.38

Weight (kDa)

10.86

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 72 - 150 2.6e-25 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 266
AfaI GTAC 2 cut(s) 43, 431
AgsI TTSAA 3 cut(s) 12, 244, 372
AluBI AGCT 2 cut(s) 107, 212
AluI AGCT 2 cut(s) 107, 212
Alw26I GTCTC 2 cut(s) 243, 334
AlwI GGATC 1 cut(s) 266
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 212, 215
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 70, 302
AvaII GGWCC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 199, 227
BccI CCATC 2 cut(s) 81, 107
BcoDI GTCTC 2 cut(s) 243, 334
BfmI CTRYAG 2 cut(s) 213, 262
BfuAI ACCTGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 317
BisI GCNGC 2 cut(s) 213, 216
BlsI GCNGC 2 cut(s) 214, 217
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 447, 448
BsaBI GATNNNNATC 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bse8I GATNNNNATC 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 95
BseJI GATNNNNATC 1 cut(s) 158
BseMII CTCAG 4 cut(s) 328, 341, 371, 396
BseXI GCAGC 2 cut(s) 199, 227
BshFI GGCC 1 cut(s) 239
BslFI GGGAC 1 cut(s) 432
BsmAI GTCTC 2 cut(s) 243, 334
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 243
Bsp143I GATC 4 cut(s) 153, 159, 258, 317
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 4 cut(s) 327, 340, 372, 397
BspLI GGNNCC 2 cut(s) 447, 448
BspMAI CTGCAG 2 cut(s) 217, 266
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 153, 159, 258, 317
BssT1I CCWWGG 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 314, 327, 380, 405
BstF5I GGATG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 4 cut(s) 156, 162, 261, 320
BstMAI GTCTC 2 cut(s) 243, 334
BstMBI GATC 4 cut(s) 153, 159, 258, 317
BstMWI GCNNNNNNNGC 2 cut(s) 200, 209
BstSFI CTRYAG 2 cut(s) 213, 262
BstV1I GCAGC 2 cut(s) 199, 227
BstX2I RGATCY 2 cut(s) 258, 317
BstYI RGATCY 2 cut(s) 258, 317
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 42, 430
CviAII CATG 1 cut(s) 427
CviJI RGCY 7 cut(s) 72, 107, 120, 203, 212, 239, 394
CviKI_1 RGCY 7 cut(s) 72, 107, 120, 203, 212, 239, 394
CviQI GTAC 2 cut(s) 42, 430
DdeI CTNAG 4 cut(s) 314, 327, 380, 405
DpnI GATC 4 cut(s) 155, 161, 260, 319
DpnII GATC 4 cut(s) 153, 159, 258, 317
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 253
Eco147I AGGCCT 1 cut(s) 239
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 430
FaiI YATR 5 cut(s) 33, 173, 355, 416, 428
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 432
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 213, 216
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 213, 216
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 213, 216
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 1 cut(s) 292
Hin1II CATG 1 cut(s) 430
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 5 cut(s) 141, 271, 307, 342, 410
HphI GGTGA 2 cut(s) 70, 302
Hpy188I TCNGA 2 cut(s) 317, 406
Hpy188III TCNNGA 2 cut(s) 157, 372
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 35, 215, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 209
HpyF3I CTNAG 4 cut(s) 314, 327, 380, 405
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 430
HspAI GCGC 1 cut(s) 290
KflI GGGWCCC 1 cut(s) 446
Kzo9I GATC 4 cut(s) 153, 159, 258, 317
LpnPI CCDG 4 cut(s) 184, 250, 314, 350
Lsp1109I GCAGC 2 cut(s) 199, 227
MaeII ACGT 1 cut(s) 298
MalI GATC 4 cut(s) 155, 161, 260, 319
MboI GATC 4 cut(s) 153, 159, 258, 317
MboII GAAGA 3 cut(s) 163, 171, 339
MflI RGATCY 2 cut(s) 258, 317
MluCI AATT 1 cut(s) 28
MlyI GAGTC 3 cut(s) 280, 301, 336
MnlI CCTC 8 cut(s) 64, 131, 229, 323, 361, 400, 411, 443
MwoI GCNNNNNNNGC 2 cut(s) 200, 209
NdeII GATC 4 cut(s) 153, 159, 258, 317
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 2 cut(s) 447, 448
PaqCI CACCTGC 1 cut(s) 255
PceI AGGCCT 1 cut(s) 239
PfeI GAWTC 2 cut(s) 141, 410
PkrI GCNGC 2 cut(s) 214, 217
PleI GAGTC 3 cut(s) 279, 301, 336
PpsI GAGTC 3 cut(s) 279, 301, 336
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 447, 448
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 2 cut(s) 217, 266
PsuI RGATCY 2 cut(s) 258, 317
RsaI GTAC 2 cut(s) 43, 431
RsaNI GTAC 2 cut(s) 42, 430
SatI GCNGC 2 cut(s) 213, 216
Sau3AI GATC 4 cut(s) 153, 159, 258, 317
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 3 cut(s) 280, 301, 336
SetI ASST 6 cut(s) 109, 214, 269, 301, 315, 435
SfcI CTRYAG 2 cut(s) 213, 262
SinI GGWCC 1 cut(s) 446
Sse9I AATT 1 cut(s) 28
SseBI AGGCCT 1 cut(s) 239
SspI AATATT 1 cut(s) 15
StuI AGGCCT 1 cut(s) 239
StyI CCWWGG 1 cut(s) 253
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 28
TfiI GAWTC 2 cut(s) 141, 410
TseI GCWGC 2 cut(s) 212, 215
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.