pycom11g20680

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000303
Physical Location & Seq
Forward (+)
23794265 .. 23794531
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20680.1

Sequence Viewer

Length: 267 bp
ATGAGTGCCGCGTGCAGAGCTTGGATTGTGGCAGCAAGTATTGGAGCAATTGAGGCACTGAAAGACCAAGGAGTCTGCAGGTGGAATGGGGTTCTGAGATCAGTCCACCAACATGCCAGGAACAACATCAGATCCTATTCCGAAGTCAAGAAACTCTCTGACTCTTCGTCTTCTGCAATTTCTATGAAGATGCAGAGATCACAGGAAGACAAGTTGAGAAAAGTCATGGAATTGAACTGTTGGGGTCCTAATACCATAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

89

Amino Acids

9.91

Weight (kDa)

9.94

Isoelectric Point (pI)

70.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 83 3.2e-28 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 69
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 235
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwI GGATC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 162, 213
BbvI GCAGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 2 cut(s) 9, 33
BlsI GCNGC 2 cut(s) 10, 34
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 245
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 2 cut(s) 162, 213
BsaJI CCNNGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 11
Bsp143I GATC 3 cut(s) 98, 131, 197
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 3 cut(s) 98, 131, 197
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 3 cut(s) 101, 134, 200
BstMBI GATC 3 cut(s) 98, 131, 197
BstMWI GCNNNNNNNGC 2 cut(s) 17, 53
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 2 cut(s) 162, 213
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 245
CviAII CATG 2 cut(s) 113, 226
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 100, 133, 199
DpnII GATC 3 cut(s) 98, 131, 197
DrdI GACNNNNNNGTC 1 cut(s) 71
DriI GACNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 169
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 116, 229
FaiI YATR 4 cut(s) 114, 185, 227, 257
FatI CATG 2 cut(s) 112, 225
Fnu4HI GCNGC 2 cut(s) 9, 33
Fsp4HI GCNGC 2 cut(s) 9, 33
GluI GCNGC 2 cut(s) 9, 33
Hin1II CATG 2 cut(s) 116, 229
HinfI GANTC 2 cut(s) 72, 161
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 96, 131, 142, 160
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 15, 78, 176, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 53
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 2 cut(s) 116, 229
Kzo9I GATC 3 cut(s) 98, 131, 197
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 4 cut(s) 64, 103, 130, 188
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 180
MalI GATC 3 cut(s) 100, 133, 199
MboI GATC 3 cut(s) 98, 131, 197
MboII GAAGA 4 cut(s) 156, 162, 199, 218
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 131
MluCI AATT 3 cut(s) 48, 177, 230
MlyI GAGTC 2 cut(s) 81, 155
MnlI CCTC 1 cut(s) 46
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 17, 53
NdeII GATC 3 cut(s) 98, 131, 197
NlaIII CATG 2 cut(s) 116, 229
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 69
PkrI GCNGC 2 cut(s) 10, 34
PleI GAGTC 2 cut(s) 80, 155
PpsI GAGTC 2 cut(s) 80, 155
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 111
SatI GCNGC 2 cut(s) 9, 33
Sau3AI GATC 3 cut(s) 98, 131, 197
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 2 cut(s) 81, 155
ScrFI CCNGG 1 cut(s) 118
SetI ASST 2 cut(s) 22, 83
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 3 cut(s) 48, 177, 230
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 239
TasI AATT 3 cut(s) 48, 177, 230
TauI GCSGC 1 cut(s) 11
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 245
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.