AT5G07420

pectinesterase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2349452 .. 2351613
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07420.1

Sequence Viewer

Length: 1086 bp
ATGGGTTACATATCTCTAGCCCTAGTTGCATTACTTGTATTTTTTGCCTCGCCGGTGGTTCTCGCCGACGATATAACCCCAATTCCGGCAGACAGAGCCCAAATCCCACAATGGTTCATGGCCAACGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCCGAACTTGAAGCTGCAGAAGCATCGCGACGTGTCATCATCGTGAATCAAAATGGAGGCGGCGATTTTAAGACAATAAACGCGGCAATCAAGAGCATTCCATTAGCAAACAAGAACCGTGTGATCATAAAGTTGGCTCCTGGTATATACCATGAGAAAGTTACCGTCGACGTAGGCCGACCATACGTTACATTGCTTGGCAAACCTGGTGCGGAAACCAACTTGACTTATGCCGGAACAGCCGCTAAATACGGCACCGTGGAGAGTGCCACGCTTATCGTCTGGGCCACAAATTTTTTGGCAGCCAACCTAAACATTATAAACACTTCTCCAATGCCAAAGCCTGGTACACAAGGACAAGCTCTAGCTATGAGAATCAACGGCGATAAGGCTGCTTTCTACAACTGCAGATTCTATGGTTTTCAAGACACTCTTTGCGACGATAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGGAACCTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCATGCTGTTGGAGACGGATTAAGAGTGATCGCGGCACACAATCGACAGAGTACAACTGAGCAAAACGGGTATTCGTTCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTAGGGCTTGGATGAGCCACCCTAAGGTCGTCTACTCCTACACTGAAATGTCTAGTGTCGTCAACCCATCTGGATGGCAAGAGAACAGAGTGCGTGCGCATGACAAGACGGTGTTCTATGGAGAATACATGTGCACGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAAGACATTGACAACAAAGAAGCTAGCCAATTCCTTACCCTCGGCTACATCAAGGGCTCCAAATGGCTTCTACCTCCTCCCGCTTACTAA

Protein Analysis

361

Amino Acids

39.66

Weight (kDa)

9.19

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 67 - 351 5.8e-58 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
Acc16I TGCGCA 1 cut(s) 918
AccB1I GGYRCC 1 cut(s) 416
AccB7I CCANNNNNTGG 1 cut(s) 506
AccI GTMKAC 2 cut(s) 330, 852
AccII CGCG 3 cut(s) 190, 245, 731
AciI CCGC 6 cut(s) 222, 245, 374, 405, 731, 1077
AclI AACGTT 1 cut(s) 126
AclWI GGATC 2 cut(s) 818, 973
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 454
AfaI GTAC 3 cut(s) 511, 683, 751
AfiI CCNNNNNNNGG 5 cut(s) 85, 147, 148, 506, 844
AflIII ACRYGT 2 cut(s) 193, 948
AgsI TTSAA 2 cut(s) 173, 587
AjiI CACGTC 1 cut(s) 194
AjnI CCWGG 4 cut(s) 301, 367, 505, 961
AluBI AGCT 5 cut(s) 176, 524, 530, 674, 1019
AluI AGCT 5 cut(s) 176, 524, 530, 674, 1019
Alw21I GWGCWC 1 cut(s) 956
Alw26I GTCTC 2 cut(s) 139, 705
Alw44I GTGCAC 1 cut(s) 952
AlwI GGATC 2 cut(s) 818, 973
AoxI GGCC 3 cut(s) 120, 337, 447
ApaLI GTGCAC 1 cut(s) 952
ApeKI GCWGC 3 cut(s) 176, 464, 554
ApoI RAATTY 1 cut(s) 454
AspLEI GCGC 1 cut(s) 919
AspS9I GGNCC 2 cut(s) 447, 959
AsuC2I CCSGG 1 cut(s) 808
AsuNHI GCTAGC 1 cut(s) 1019
AvaII GGWCC 1 cut(s) 959
AxyI CCTNAGG 1 cut(s) 843
BaeGI GKGCMC 2 cut(s) 155, 956
BalI TGGCCA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 100, 1055
Bbv12I GWGCWC 1 cut(s) 956
BbvI GCAGC 3 cut(s) 163, 476, 541
BccI CCATC 2 cut(s) 888, 895
BceAI ACGGC 2 cut(s) 430, 559
BcgI CGANNNNNNTGC 4 cut(s) 168, 202, 536, 570
BciT130I CCWGG 4 cut(s) 303, 369, 507, 963
BclI TGATCA 1 cut(s) 285
BcnI CCSGG 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 139, 705
BfaI CTAG 6 cut(s) 17, 23, 158, 527, 873, 1020
BfmI CTRYAG 2 cut(s) 177, 568
BisI GCNGC 7 cut(s) 177, 223, 246, 405, 465, 555, 732
BlsI GCNGC 7 cut(s) 178, 224, 247, 406, 466, 556, 733
Bme1390I CCNGG 5 cut(s) 303, 369, 507, 808, 963
Bme18I GGWCC 1 cut(s) 959
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 447, 959
BmiI GGNNCC 6 cut(s) 300, 418, 646, 805, 960, 1054
BmrFI CCNGG 5 cut(s) 303, 369, 507, 808, 963
BmsI GCATC 1 cut(s) 194
BmtI GCTAGC 1 cut(s) 1023
BpmI CTGGAG 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 420, 1036
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 147, 148, 506, 844
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 799
Bse21I CCTNAGG 1 cut(s) 843
Bse3DI GCAATG 2 cut(s) 353, 781
BseBI CCWGG 4 cut(s) 303, 369, 507, 963
BseDI CCNNGG 2 cut(s) 420, 1036
BseGI GGATG 2 cut(s) 837, 899
BseLI CCNNNNNNNGG 5 cut(s) 85, 147, 148, 506, 844
BseMI GCAATG 2 cut(s) 353, 781
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 2 cut(s) 684, 1062
BseSI GKGCMC 2 cut(s) 155, 956
BseXI GCAGC 3 cut(s) 163, 476, 541
Bsh1236I CGCG 3 cut(s) 190, 245, 731
BshFI GGCC 3 cut(s) 122, 339, 449
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 956
BsiSI CCGG 4 cut(s) 53, 86, 396, 807
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 5 cut(s) 85, 147, 148, 506, 844
BsmAI GTCTC 2 cut(s) 139, 705
BsmBI CGTCTC 2 cut(s) 139, 705
BsmFI GGGAC 1 cut(s) 972
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 3 cut(s) 122, 339, 449
Bsp1286I GDGCHC 4 cut(s) 100, 155, 956, 1055
Bsp143I GATC 4 cut(s) 285, 726, 810, 965
Bsp68I TCGCGA 1 cut(s) 190
BspACI CCGC 6 cut(s) 222, 245, 374, 405, 731, 1077
BspANI GGCC 3 cut(s) 122, 339, 449
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 3 cut(s) 190, 245, 731
BspLI GGNNCC 6 cut(s) 300, 418, 646, 805, 960, 1054
BspMAI CTGCAG 2 cut(s) 181, 572
BspOI GCTAGC 1 cut(s) 1023
BspPI GGATC 2 cut(s) 818, 973
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 2 cut(s) 353, 781
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 420, 1036
BssMI GATC 4 cut(s) 285, 726, 810, 965
Bst2UI CCWGG 4 cut(s) 303, 369, 507, 963
Bst4CI ACNGT 4 cut(s) 281, 328, 421, 931
Bst6I CTCTTC 2 cut(s) 661, 974
BstC8I GCNNGC 4 cut(s) 155, 702, 915, 1021
BstDEI CTNAG 2 cut(s) 756, 843
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 837, 899
BstFNI CGCG 3 cut(s) 190, 245, 731
BstHHI GCGC 1 cut(s) 919
BstKTI GATC 4 cut(s) 288, 729, 813, 968
BstMAI GTCTC 2 cut(s) 139, 705
BstMBI GATC 4 cut(s) 285, 726, 810, 965
BstMWI GCNNNNNNNGC 4 cut(s) 26, 95, 182, 401
BstNI CCWGG 4 cut(s) 303, 369, 507, 963
BstNSI RCATGY 2 cut(s) 704, 952
BstSCI CCNGG 5 cut(s) 301, 367, 505, 806, 961
BstSFI CTRYAG 2 cut(s) 177, 568
BstSLI GKGCMC 2 cut(s) 155, 956
BstUI CGCG 3 cut(s) 190, 245, 731
BstV1I GCAGC 3 cut(s) 163, 476, 541
BstX2I RGATCY 1 cut(s) 810
BstXI CCANNNNNNTGG 1 cut(s) 894
BstYI RGATCY 1 cut(s) 810
Bsu36I CCTNAGG 1 cut(s) 843
BsuRI GGCC 3 cut(s) 122, 339, 449
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 837, 899
BtsIMutI CAGTG 1 cut(s) 861
BtuMI TCGCGA 1 cut(s) 190
Cac8I GCNNGC 4 cut(s) 155, 702, 915, 1021
CfoI GCGC 1 cut(s) 919
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 447, 959
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 3 cut(s) 510, 682, 750
CviAII CATG 5 cut(s) 118, 314, 701, 920, 949
CviQI GTAC 3 cut(s) 510, 682, 750
DdeI CTNAG 2 cut(s) 756, 843
DpnI GATC 4 cut(s) 287, 728, 812, 967
DpnII GATC 4 cut(s) 285, 726, 810, 965
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 661, 974
EarI CTCTTC 2 cut(s) 661, 974
Eco24I GRGCYC 2 cut(s) 100, 1055
Eco47I GGWCC 1 cut(s) 959
Eco81I CCTNAGG 1 cut(s) 843
EcoRII CCWGG 4 cut(s) 301, 367, 505, 961
EcoT38I GRGCYC 2 cut(s) 100, 1055
Esp3I CGTCTC 2 cut(s) 139, 705
FaeI CATG 5 cut(s) 121, 317, 704, 923, 952
FalI AAGNNNNNCTT 4 cut(s) 579, 611, 658, 690
FaqI GGGAC 1 cut(s) 972
FatI CATG 5 cut(s) 117, 313, 700, 919, 948
FauI CCCGC 1 cut(s) 1084
FbaI TGATCA 1 cut(s) 285
FblI GTMKAC 2 cut(s) 330, 852
Fnu4HI GCNGC 7 cut(s) 177, 223, 246, 405, 465, 555, 732
FokI GGATG 2 cut(s) 844, 906
FriOI GRGCYC 2 cut(s) 100, 1055
Fsp4HI GCNGC 7 cut(s) 177, 223, 246, 405, 465, 555, 732
FspAI RTGCGCAY 1 cut(s) 918
FspBI CTAG 6 cut(s) 17, 23, 158, 527, 873, 1020
FspI TGCGCA 1 cut(s) 918
GlaI GCGC 1 cut(s) 918
GluI GCNGC 7 cut(s) 177, 223, 246, 405, 465, 555, 732
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 3 cut(s) 122, 339, 449
HapII CCGG 4 cut(s) 53, 86, 396, 807
HhaI GCGC 1 cut(s) 919
Hin1II CATG 5 cut(s) 121, 317, 704, 923, 952
Hin6I GCGC 1 cut(s) 917
HinP1I GCGC 1 cut(s) 917
HincII GTYRAC 2 cut(s) 331, 883
HindII GTYRAC 2 cut(s) 331, 883
HinfI GANTC 4 cut(s) 208, 537, 573, 798
HpaII CCGG 4 cut(s) 53, 86, 396, 807
Hpy166II GTNNAC 5 cut(s) 331, 512, 853, 883, 954
Hpy188I TCNGA 1 cut(s) 803
Hpy188III TCNNGA 5 cut(s) 189, 205, 253, 587, 891
Hpy8I GTNNAC 5 cut(s) 331, 512, 853, 883, 954
Hpy99I CGWCG 5 cut(s) 71, 195, 332, 335, 605
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 4 cut(s) 281, 328, 421, 931
HpyCH4IV ACGT 4 cut(s) 126, 193, 333, 348
HpyCH4V TGCA 7 cut(s) 29, 179, 570, 700, 781, 786, 954
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 95, 182, 401
HpyF3I CTNAG 2 cut(s) 756, 843
HpySE526I ACGT 4 cut(s) 126, 193, 333, 348
Hsp92II CATG 5 cut(s) 121, 317, 704, 923, 952
HspAI GCGC 1 cut(s) 917
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 285, 726, 810, 965
LmnI GCTCC 3 cut(s) 304, 671, 1058
Lsp1109I GCAGC 3 cut(s) 163, 476, 541
LweI GCATC 1 cut(s) 194
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 6 cut(s) 17, 23, 158, 527, 873, 1020
MaeII ACGT 4 cut(s) 126, 193, 333, 348
MaeIII GTNAC 5 cut(s) 5, 322, 349, 632, 790
MalI GATC 4 cut(s) 287, 728, 812, 967
MboI GATC 4 cut(s) 285, 726, 810, 965
MboII GAAGA 2 cut(s) 678, 991
MfeI CAATTG 1 cut(s) 695
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 4 cut(s) 100, 155, 956, 1055
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 5 cut(s) 81, 454, 628, 695, 1025
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 807
MmeI TCCRAC 2 cut(s) 688, 781
MnlI CCTC 7 cut(s) 58, 212, 602, 662, 1046, 1080, 1083
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 4 cut(s) 129, 231, 624, 719
MslI CAYNNNNRTG 3 cut(s) 203, 866, 892
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 4 cut(s) 53, 86, 396, 807
MspR9I CCNGG 5 cut(s) 303, 369, 507, 808, 963
MunI CAATTG 1 cut(s) 695
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 4 cut(s) 303, 369, 507, 963
MvnI CGCG 3 cut(s) 190, 245, 731
MwoI GCNNNNNNNGC 4 cut(s) 26, 95, 182, 401
NciI CCSGG 1 cut(s) 808
NdeII GATC 4 cut(s) 285, 726, 810, 965
NheI GCTAGC 1 cut(s) 1019
NlaIII CATG 5 cut(s) 121, 317, 704, 923, 952
NlaIV GGNNCC 6 cut(s) 300, 418, 646, 805, 960, 1054
NmeAIII GCCGAG 1 cut(s) 1017
NruI TCGCGA 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 918
NspI RCATGY 2 cut(s) 704, 952
PaeI GCATGC 1 cut(s) 704
PciI ACATGT 1 cut(s) 948
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 208, 537, 573
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 7 cut(s) 178, 224, 247, 406, 466, 556, 733
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
PscI ACATGT 1 cut(s) 948
PsiI TTATAA 1 cut(s) 482
Psp1406I AACGTT 1 cut(s) 126
Psp6I CCWGG 4 cut(s) 301, 367, 505, 961
PspGI CCWGG 4 cut(s) 301, 367, 505, 961
PspN4I GGNNCC 6 cut(s) 300, 418, 646, 805, 960, 1054
PspPI GGNCC 2 cut(s) 447, 959
PstI CTGCAG 2 cut(s) 181, 572
PsuI RGATCY 1 cut(s) 810
RruI TCGCGA 1 cut(s) 190
RsaI GTAC 3 cut(s) 511, 683, 751
RsaNI GTAC 3 cut(s) 510, 682, 750
RseI CAYNNNNRTG 3 cut(s) 203, 866, 892
SalI GTCGAC 1 cut(s) 329
SaqAI TTAA 4 cut(s) 129, 231, 624, 719
SatI GCNGC 7 cut(s) 177, 223, 246, 405, 465, 555, 732
Sau3AI GATC 4 cut(s) 285, 726, 810, 965
Sau96I GGNCC 2 cut(s) 447, 959
SchI GAGTC 1 cut(s) 807
ScrFI CCNGG 5 cut(s) 303, 369, 507, 808, 963
SduI GDGCHC 4 cut(s) 100, 155, 956, 1055
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 2 cut(s) 177, 568
SgrAI CRCCGGYG 1 cut(s) 52
SgrDI CGTCGACG 1 cut(s) 329
SinI GGWCC 1 cut(s) 959
SmiMI CAYNNNNRTG 3 cut(s) 203, 866, 892
SphI GCATGC 1 cut(s) 704
Sse9I AATT 5 cut(s) 81, 454, 628, 695, 1025
SsiI CCGC 6 cut(s) 222, 245, 374, 405, 731, 1077
SspMI CTAG 6 cut(s) 17, 23, 158, 527, 873, 1020
StyD4I CCNGG 5 cut(s) 301, 367, 505, 806, 961
TaaI ACNGT 4 cut(s) 281, 328, 421, 931
TaiI ACGT 4 cut(s) 129, 196, 336, 351
TaqI TCGA 3 cut(s) 330, 639, 742
TasI AATT 5 cut(s) 81, 454, 628, 695, 1025
TatI WGTACW 2 cut(s) 681, 749
TauI GCSGC 4 cut(s) 225, 248, 407, 734
TfiI GAWTC 3 cut(s) 208, 537, 573
Tru1I TTAA 4 cut(s) 129, 231, 624, 719
Tru9I TTAA 4 cut(s) 129, 231, 624, 719
TscAI CASTG 1 cut(s) 868
TseI GCWGC 3 cut(s) 176, 464, 554
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 729
TspRI CASTG 1 cut(s) 868
Van91I CCANNNNNTGG 1 cut(s) 506
VneI GTGCAC 1 cut(s) 952
VpaK11BI GGWCC 1 cut(s) 959
XapI RAATTY 1 cut(s) 454
XceI RCATGY 2 cut(s) 704, 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmiI GTMKAC 2 cut(s) 330, 852
XspI CTAG 6 cut(s) 17, 23, 158, 527, 873, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.