Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

23248232 .. 23248734

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGTTCATTTGTTCATTGTAACGTAACTGGGATAGGCAGTGGCACATATTTGGGCAGGGCTTGGAGAGTCAGACCCCAGGTGGTGTATGCTTCCACCAGCATGACTGAGGTGGTTAACCCTGCCGGTTGGAGCAATGATAACCACCCCGAACGTGACAACACTGTGTCCTACGGAGAGTACAAGTGCATGGATCCAGGTTCAAGTACATATAATAAGAGAAATTTGAGCAAAGAACTGACAGACGAACAAGTCAAGCCTTTCATTAGCCTTGGATATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

109

Amino Acids

12.01

Weight (kDa)

8.6

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	2 cut(s)	182, 208
AgsI	TTSAA	1 cut(s)	204
AjnI	CCWGG	2 cut(s)	78, 196
AlwI	GGATC	2 cut(s)	188, 201
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	223
BamHI	GGATCC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	80, 198
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	80, 198
BmiI	GGNNCC	2 cut(s)	195, 289
BmrFI	CCNGG	2 cut(s)	80, 198
BmrI	ACTGGG	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	78, 271
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	80, 198
BseDI	CCNNGG	2 cut(s)	78, 271
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	195, 289
BspPI	GGATC	2 cut(s)	188, 201
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	78, 271
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	80, 198
Bst4CI	ACNGT	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	80, 198
BstSCI	CCNGG	2 cut(s)	78, 196
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 162
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	181, 207
CviAII	CATG	2 cut(s)	103, 190
CviJI	RGCY	4 cut(s)	62, 259, 270, 298
CviKI_1	RGCY	4 cut(s)	62, 259, 270, 298
CviQI	GTAC	2 cut(s)	181, 207
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	78, 196
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	106, 193
FaiI	YATR	7 cut(s)	49, 90, 104, 191, 211, 213, 279
FatI	CATG	2 cut(s)	102, 189
Fnu4HI	GCNGC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	299
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	106, 193
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	69
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	2 cut(s)	24, 154
HpyCH4V	TGCA	1 cut(s)	189
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	24, 154
Hsp92II	CATG	2 cut(s)	106, 193
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	285
MaeII	ACGT	2 cut(s)	24, 154
MaeIII	GTNAC	3 cut(s)	20, 25, 155
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	103, 315, 318
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	80, 198
MvaI	CCWGG	2 cut(s)	80, 198
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	106, 193
NlaIV	GGNNCC	2 cut(s)	195, 289
NmuCI	GTSAC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	78, 196
PspGI	CCWGG	2 cut(s)	78, 196
PspN4I	GGNNCC	2 cut(s)	195, 289
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	2 cut(s)	182, 208
RsaNI	GTAC	2 cut(s)	181, 207
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	80, 198
SetI	ASST	5 cut(s)	27, 84, 114, 157, 202
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	223
StyD4I	CCNGG	2 cut(s)	78, 196
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	2 cut(s)	27, 157
TasI	AATT	1 cut(s)	223
TatI	WGTACW	2 cut(s)	180, 206
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	46, 169
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	5, 253
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	46, 169
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.