Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

43975815 .. 43984049

Gene Structure 8235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G538100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAAAAAAATGGTCGGAAAAACAACATGCATGGGCGTTGATGCAACTCTAACCATGACATTAATTCTCCTCACTGCCACTATAGCCATGGCGGATGATGATACACCGATACCAGCCAACCAACCCCAAGTCAACACGTGGTTCAATAACAATGTGAAGCCGTACACAGAGCGGCAGGGCACGCTTGACCCTGCCCTTGCAACGGCTGAGGCTGGTCAAACCGTCATCAAGGTCATGAAAGATGGAAGTGGCCAATTCAAGACTATTACTGACGCCATTAATAGCATTCCGGCCGACAACACCAAACGTGTCATTGTGTACATTGGAGAGGGAAAGTACGAAGAGAAAATCACAATTCCACGGAATAAACCATTTGTTACATTTTTTGGCTCTCCAACCAATATGCCAACTTTGACCTTTGCTGGCACAGCCCAAAAGTATGGAACTGTGAACAGTGCCACAGTGATTGTTGAATCTGACTACTTTATGGCAGCTAATGTTATTATTAAGAACTCTTCACCAAGGCCAGATGGGAAAGCAGTGGGAGCGCAGGCAGTGGCATTGAGGGTGTCGGGGAATAAGTCAGCCTTGTACAATTGCAAACTTATTGGTTTCCAGGACACCTTTTGTGATGACAAGGGCAATCATTTTTTGAAGGACTGCTTTATTGAAGGCACTGTGGATTTCATCTGGGGAAGTGGAAAGTCTCTCTATTTGAACAATGAGTTACATGTGGTGGGGGATAATGGATTAACAGTGATAACAGCACAAGCAAGGGACTCATCTTCAGATGATACTGGATACTCATTTGTCCACTGCAAGATAACTGGGACTGGAAATGGCACATATTTGGGCAGGGCTTGGAGGATCAGTCCCATGGTGGTCTTTGCCTACACCAGCATGTCTGAGGTCATCAACCCCGCTGGCTGGAGCGACGATAACCACCCCGAACGTGACAACACTGTGTTCTATGGAGAATACAAGTGTTCGGGTCCAGGTTCAAGTGCGGCTGGGAGAGTAAAATACACCAAACAATTGACGGACGAACAAATCAAACCTTTCCTAAGCCTTGGCTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCCAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

375

Amino Acids

40.62

Weight (kDa)

7.55

Isoelectric Point (pI)

20.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	4 cut(s)	92, 172, 921, 1007
AclWI	GGATC	1 cut(s)	875
AcoI	YGGCCR	2 cut(s)	250, 291
AcuI	CTGAAG	1 cut(s)	771
AcvI	CACGTG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	4 cut(s)	164, 320, 338, 593
AfiI	CCNNNNNNNGG	2 cut(s)	202, 927
AflIII	ACRYGT	3 cut(s)	135, 307, 730
AgsI	TTSAA	7 cut(s)	145, 259, 473, 655, 671, 718, 1002
AjnI	CCWGG	2 cut(s)	615, 994
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	875
AoxI	GGCC	3 cut(s)	250, 291, 524
ApeKI	GCWGC	2 cut(s)	491, 1096
AseI	ATTAAT	2 cut(s)	62, 279
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	992
AsuHPI	GGTGA	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	252
BbrPI	CACGTG	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	503, 1083
BccI	CCATC	2 cut(s)	236, 524
BceAI	ACGGC	2 cut(s)	145, 219
BciT130I	CCWGG	2 cut(s)	617, 996
BciVI	GTATCC	1 cut(s)	794
BcoDI	GTCTC	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	794
BisI	GCNGC	4 cut(s)	173, 492, 1008, 1097
BlsI	GCNGC	4 cut(s)	174, 493, 1009, 1098
Bme1390I	CCNGG	2 cut(s)	617, 996
Bme18I	GGWCC	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	992
BmiI	GGNNCC	2 cut(s)	993, 1087
BmrFI	CCNGG	2 cut(s)	617, 996
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	837
BpmI	CTGGAG	1 cut(s)	949
Bpu10I	CCTNAGC	2 cut(s)	207, 1064
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	5 cut(s)	87, 359, 521, 876, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	856, 886
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 927
Bse1I	ACTGG	3 cut(s)	802, 832, 838
BseBI	CCWGG	2 cut(s)	617, 996
BseDI	CCNNGG	5 cut(s)	87, 359, 521, 876, 1069
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	202, 927
BseMII	CTCAG	2 cut(s)	198, 897
BseNI	ACTGG	3 cut(s)	802, 832, 838
BseRI	GAGGAG	2 cut(s)	59, 1095
BseSI	GKGCMC	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	503, 1083
BseYI	CCCAGC	1 cut(s)	1010
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	252, 293, 526
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	3 cut(s)	791, 844, 858
BslI	CCNNNNNNNGG	2 cut(s)	202, 927
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	3 cut(s)	791, 844, 858
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	252, 293, 526
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp1407I	TGTACA	2 cut(s)	318, 591
Bsp143I	GATC	1 cut(s)	867
Bsp19I	CCATGG	2 cut(s)	87, 876
BspACI	CCGC	4 cut(s)	92, 172, 921, 1007
BspANI	GGCC	3 cut(s)	252, 293, 526
BspCNI	CTCAG	2 cut(s)	199, 898
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	993, 1087
BspPI	GGATC	1 cut(s)	875
BsrBI	CCGCTC	1 cut(s)	172
BsrGI	TGTACA	2 cut(s)	318, 591
BsrI	ACTGG	3 cut(s)	802, 832, 838
BssECI	CCNNGG	5 cut(s)	87, 359, 521, 876, 1069
BssMI	GATC	1 cut(s)	867
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	4 cut(s)	87, 521, 876, 1069
Bst2UI	CCWGG	2 cut(s)	617, 996
Bst4CI	ACNGT	7 cut(s)	223, 448, 455, 463, 679, 757, 964
Bst6I	CTCTTC	2 cut(s)	336, 520
BstACI	GRCGYC	1 cut(s)	273
BstAUI	TGTACA	2 cut(s)	318, 591
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	182, 424, 552, 925
BstDEI	CTNAG	3 cut(s)	207, 906, 1064
BstDSI	CCRYGG	3 cut(s)	87, 359, 876
BstF5I	GGATG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	1 cut(s)	870
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	1 cut(s)	867
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 181, 428, 545
BstNI	CCWGG	2 cut(s)	617, 996
BstNSI	RCATGY	3 cut(s)	30, 734, 904
BstSCI	CCNGG	2 cut(s)	615, 994
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	503, 1083
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstZI	CGGCCG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	252, 293, 526
BtgI	CCRYGG	3 cut(s)	87, 359, 876
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	4 cut(s)	72, 546, 561, 814
BtsIMutI	CAGTG	9 cut(s)	72, 460, 468, 546, 561, 675, 762, 814, 960
Cac8I	GCNNGC	4 cut(s)	182, 424, 552, 925
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	992
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	4 cut(s)	163, 319, 337, 592
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	8 cut(s)	27, 31, 55, 88, 235, 731, 877, 901
CviQI	GTAC	4 cut(s)	163, 319, 337, 592
DdeI	CTNAG	3 cut(s)	207, 906, 1064
DpnI	GATC	1 cut(s)	869
DpnII	GATC	1 cut(s)	867
EaeI	YGGCCR	2 cut(s)	250, 291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	336, 520
EarI	CTCTTC	2 cut(s)	336, 520
EciI	GGCGGA	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	4 cut(s)	87, 521, 876, 1069
Eco47I	GGWCC	1 cut(s)	992
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	771
Eco72I	CACGTG	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	615, 994
EcoT14I	CCWWGG	4 cut(s)	87, 521, 876, 1069
EcoT22I	ATGCAT	1 cut(s)	32
ErhI	CCWWGG	4 cut(s)	87, 521, 876, 1069
FaeI	CATG	8 cut(s)	30, 34, 58, 91, 238, 734, 880, 904
FalI	AAGNNNNNCTT	4 cut(s)	572, 604, 647, 679
FaqI	GGGAC	3 cut(s)	791, 844, 858
FatI	CATG	8 cut(s)	26, 30, 54, 87, 234, 730, 876, 900
FauI	CCCGC	1 cut(s)	928
Fnu4HI	GCNGC	4 cut(s)	173, 492, 1008, 1097
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	4 cut(s)	173, 492, 1008, 1097
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	4 cut(s)	173, 492, 1008, 1097
GsaI	CCCAGC	1 cut(s)	1014
GsuI	CTGGAG	1 cut(s)	949
HaeIII	GGCC	3 cut(s)	252, 293, 526
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	8 cut(s)	30, 34, 58, 91, 238, 734, 880, 904
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	473, 779
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	510
Hpy166II	GTNNAC	5 cut(s)	133, 165, 319, 451, 814
Hpy188I	TCNGA	4 cut(s)	17, 478, 790, 907
Hpy188III	TCNNGA	2 cut(s)	235, 259
Hpy8I	GTNNAC	5 cut(s)	133, 165, 319, 451, 814
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	2 cut(s)	649, 665
HpyCH4III	ACNGT	7 cut(s)	223, 448, 455, 463, 679, 757, 964
HpyCH4IV	ACGT	3 cut(s)	137, 307, 952
HpyCH4V	TGCA	5 cut(s)	30, 44, 200, 600, 819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 181, 428, 545
HpyF3I	CTNAG	3 cut(s)	207, 906, 1064
HpySE526I	ACGT	3 cut(s)	137, 307, 952
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	8 cut(s)	30, 34, 58, 91, 238, 734, 880, 904
HspAI	GCGC	1 cut(s)	548
Kzo9I	GATC	1 cut(s)	867
LmnI	GCTCC	2 cut(s)	545, 930
Lsp1109I	GCAGC	2 cut(s)	503, 1083
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	3 cut(s)	137, 307, 952
MaeIII	GTNAC	3 cut(s)	376, 726, 953
MalI	GATC	1 cut(s)	869
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	1 cut(s)	867
MboII	GAAGA	3 cut(s)	353, 507, 777
MfeI	CAATTG	2 cut(s)	595, 1034
MhlI	GDGCHC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	5 cut(s)	63, 254, 354, 595, 1034
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	8 cut(s)	80, 202, 322, 558, 858, 901, 1113, 1116
Mox20I	TGGCCA	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	4 cut(s)	62, 279, 507, 752
MslI	CAYNNNNRTG	1 cut(s)	899
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	617, 996
MunI	CAATTG	2 cut(s)	595, 1034
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	617, 996
MwoI	GCNNNNNNNGC	4 cut(s)	83, 181, 428, 545
NcoI	CCATGG	2 cut(s)	87, 876
NdeII	GATC	1 cut(s)	867
NlaIII	CATG	8 cut(s)	30, 34, 58, 91, 238, 734, 880, 904
NlaIV	GGNNCC	2 cut(s)	993, 1087
NmuCI	GTSAC	1 cut(s)	953
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	3 cut(s)	30, 734, 904
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	1 cut(s)	730
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	4 cut(s)	174, 493, 1009, 1098
PleI	GAGTC	1 cut(s)	773
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	773
Ppu21I	YACGTR	1 cut(s)	138
PscI	ACATGT	1 cut(s)	730
PshBI	ATTAAT	2 cut(s)	62, 279
Psp6I	CCWGG	2 cut(s)	615, 994
PspCI	CACGTG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	1010
PspGI	CCWGG	2 cut(s)	615, 994
PspN4I	GGNNCC	2 cut(s)	993, 1087
PspPI	GGNCC	1 cut(s)	992
RsaI	GTAC	4 cut(s)	164, 320, 338, 593
RsaNI	GTAC	4 cut(s)	163, 319, 337, 592
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	4 cut(s)	62, 279, 507, 752
SatI	GCNGC	4 cut(s)	173, 492, 1008, 1097
Sau3AI	GATC	1 cut(s)	867
Sau96I	GGNCC	1 cut(s)	992
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	617, 996
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	992
SmiMI	CAYNNNNRTG	1 cut(s)	899
Sse9I	AATT	5 cut(s)	63, 254, 354, 595, 1034
SsiI	CCGC	4 cut(s)	92, 172, 921, 1007
StyD4I	CCNGG	2 cut(s)	615, 994
StyI	CCWWGG	4 cut(s)	87, 521, 876, 1069
TaaI	ACNGT	7 cut(s)	223, 448, 455, 463, 679, 757, 964
TaiI	ACGT	3 cut(s)	140, 310, 955
TasI	AATT	5 cut(s)	63, 254, 354, 595, 1034
TatI	WGTACW	2 cut(s)	318, 591
TauI	GCSGC	2 cut(s)	175, 1010
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	4 cut(s)	62, 279, 507, 752
Tru9I	TTAA	4 cut(s)	62, 279, 507, 752
TscAI	CASTG	9 cut(s)	79, 460, 468, 546, 561, 682, 762, 821, 967
TseFI	GTSAC	1 cut(s)	953
TseI	GCWGC	2 cut(s)	491, 1096
Tsp45I	GTSAC	1 cut(s)	953
TspDTI	ATGAA	3 cut(s)	17, 251, 676
TspGWI	ACGGA	2 cut(s)	376, 1055
TspRI	CASTG	9 cut(s)	79, 460, 468, 546, 561, 682, 762, 821, 967
VpaK11BI	GGWCC	1 cut(s)	992
VspI	ATTAAT	2 cut(s)	62, 279
XceI	RCATGY	3 cut(s)	30, 734, 904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.