AT5G61680

Pectinesterase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
24786162 .. 24788060
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61680.1

Sequence Viewer

Length: 1095 bp
ATGGGATACAATTATGTGTCCCTCATAGTAACAATCCTGCTCGTGGTGATTACATCGCCCGTGGTTTTCGGTAACGATGCAGCACCAATTCCGGAGAACAAAGGCCGAATCGAGCAGTGGTTCAACACCAACGTCCCTTCGTTGGCTAGTAGAAAAAGCACATCAGATCCAGCTCTATTGACCGCTGAGGCTAAGCCACGCATCATCAAGGTGAAACAAAATGGAAGAGGCCATTTCAAGACAATAACCGAAGCGATAAATAGTGTACGGGCAGGGAACACTAGGCGTGTGATCATCAAGATAGGTCCTGGTGTATACAAAGAGAAGGTCACGATAGATAGAAGCAAGCCATTCATCACACTGTACGGTCATCCAAATGCAATGCCGGTATTGACATTCGACGGTACCGCAGCACAATATGGGACAGTCGATAGCGCAACTCTCATTGTCTTGTCCGACTATTTCATGGCTGTTAACATCATCCTTAAGAATTCTGCGCCTATGCCGGATGGTAAGAGGAAGGGAGCACAAGCTTTATCTATGAGAATCTCTGGCAACAAAGCAGCTTTCTACAACTGTAAATTTTACGGTTATCAAGACACGATTTGCGATGACACCGGAAACCATTTCTTCAAAGACTGCTACATCGAAGGCACATTTGATTTCATCTTTGGAAGCGGACGCTCTCTGTACCTCGGTACACAACTAAACGTTGTGGGAGATGGAATCAGAGTGATCACAGCTCATGCGGGAAAAAGCGCTGCAGAGAAAAGCGGATACTCGTTCGTCCACTGCAAGGTTACAGGGACTGGAACCGGGATCTACTTGGGTCGATCATGGATGAGCCACCCCAAGGTTGTTTATGCATACACGGATATGTCAAGTGTTGTGAACCCATCTGGATGGCAAGAAAACCGCGAGGCCGGACGTGACAAGACGGTGTTCTATGGAGAATATAAGTGCACAGGAACAGGATCGCACAAGGAGAAGAGAGTAAAGTATACACAAGACATTGATGACATAGAAGCTAAGTACTTCATCTCGCTTGGCTACATCCAAGGATCTAGCTGGCTCCTGCCTCCTCCTTCTTTCTAA

Protein Analysis

364

Amino Acids

40.06

Weight (kDa)

9.3

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 70 - 354 5.8e-57 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 404
AccI GTMKAC 2 cut(s) 315, 1001
AccII CGCG 1 cut(s) 918
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 6 cut(s) 183, 408, 678, 749, 774, 916
AclI AACGTT 1 cut(s) 711
AclWI GGATC 4 cut(s) 161, 827, 982, 1069
AcsI RAATTY 2 cut(s) 490, 581
AfaI GTAC 6 cut(s) 267, 365, 406, 692, 700, 1034
AfeI AGCGCT 1 cut(s) 760
AfiI CCNNNNNNNGG 4 cut(s) 43, 142, 796, 853
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 3 cut(s) 124, 238, 634
AjiI CACGTC 1 cut(s) 929
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 6 cut(s) 173, 533, 566, 743, 1028, 1068
AluI AGCT 6 cut(s) 173, 533, 566, 743, 1028, 1068
Alw21I GWGCWC 2 cut(s) 529, 965
Alw44I GTGCAC 1 cut(s) 961
AlwI GGATC 4 cut(s) 161, 827, 982, 1069
AlwNI CAGNNNCTG 1 cut(s) 809
Aor13HI TCCGGA 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 760
AoxI GGCC 3 cut(s) 103, 229, 921
ApaLI GTGCAC 1 cut(s) 961
ApeKI GCWGC 4 cut(s) 80, 410, 563, 761
ApoI RAATTY 2 cut(s) 490, 581
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
Asp718I GGTACC 1 cut(s) 404
AspLEI GCGC 3 cut(s) 437, 499, 761
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 817
AsuHPI GGTGA 2 cut(s) 58, 223
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 965
BanI GGYRCC 1 cut(s) 404
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 529, 965
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 92, 422, 575, 748
BccI CCATC 4 cut(s) 503, 716, 897, 904
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 770
BclI TGATCA 2 cut(s) 291, 735
BcnI CCSGG 1 cut(s) 817
BfaI CTAG 3 cut(s) 147, 282, 1065
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 762
BfrI CTTAAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 770
BisI GCNGC 4 cut(s) 81, 411, 564, 762
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 4 cut(s) 82, 412, 565, 763
BmcAI AGTACT 1 cut(s) 1034
Bme1390I CCNGG 2 cut(s) 309, 817
Bme18I GGWCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 3 cut(s) 406, 814, 1073
BmrFI CCNGG 2 cut(s) 309, 817
BmsI GCATC 2 cut(s) 67, 210
Bpu10I CCTNAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 817
BsaJI CCNNGG 4 cut(s) 60, 694, 852, 1057
BsaWI WCCGGW 2 cut(s) 91, 617
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 142, 796, 853
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 1 cut(s) 814
Bse3DI GCAATG 1 cut(s) 387
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 60, 694, 852, 1057
BseGI GGATG 6 cut(s) 370, 480, 514, 846, 908, 1053
BseLI CCNNNNNNNGG 4 cut(s) 43, 142, 796, 853
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 814
BseRI GAGGAG 1 cut(s) 1071
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 4 cut(s) 92, 422, 575, 748
Bsh1236I CGCG 1 cut(s) 918
BshFI GGCC 3 cut(s) 105, 231, 923
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 529, 965
BsiSI CCGG 6 cut(s) 92, 386, 506, 618, 816, 924
BslFI GGGAC 4 cut(s) 4, 119, 436, 820
BslI CCNNNNNNNGG 4 cut(s) 43, 142, 796, 853
BsmFI GGGAC 4 cut(s) 4, 119, 436, 820
BsnI GGCC 3 cut(s) 105, 231, 923
Bsp1286I GDGCHC 2 cut(s) 529, 965
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 6 cut(s) 183, 408, 678, 749, 774, 916
BspANI GGCC 3 cut(s) 105, 231, 923
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 1 cut(s) 918
BspLI GGNNCC 3 cut(s) 406, 814, 1073
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 4 cut(s) 161, 827, 982, 1069
BspT107I GGYRCC 1 cut(s) 404
BspTI CTTAAG 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 1 cut(s) 814
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 60, 694, 852, 1057
BssMI GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
BssNAI GTATAC 2 cut(s) 316, 1002
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 852, 1057
Bst1107I GTATAC 2 cut(s) 316, 1002
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 7 cut(s) 363, 368, 404, 427, 578, 590, 940
Bst6I CTCTTC 2 cut(s) 220, 983
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 347, 1070
BstDEI CTNAG 3 cut(s) 186, 192, 1029
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 6 cut(s) 370, 480, 514, 846, 908, 1053
BstFNI CGCG 1 cut(s) 918
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 3 cut(s) 437, 499, 761
BstKTI GATC 7 cut(s) 169, 294, 738, 822, 836, 977, 1064
BstMBI GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 307, 815
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 1 cut(s) 918
BstV1I GCAGC 4 cut(s) 92, 422, 575, 748
BstX2I RGATCY 3 cut(s) 166, 819, 1061
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 3 cut(s) 166, 819, 1061
BstZ17I GTATAC 2 cut(s) 316, 1002
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 3 cut(s) 105, 231, 923
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 2 cut(s) 39, 624
BtrI CACGTC 1 cut(s) 929
BtsCI GGATG 6 cut(s) 370, 480, 514, 846, 908, 1053
BtsI GCAGTG 2 cut(s) 122, 790
BtsIMutI CAGTG 3 cut(s) 122, 359, 790
Cac8I GCNNGC 2 cut(s) 347, 1070
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 3 cut(s) 437, 499, 761
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 690
Csp6I GTAC 6 cut(s) 266, 364, 405, 691, 699, 1033
CviAII CATG 3 cut(s) 466, 746, 837
CviQI GTAC 6 cut(s) 266, 364, 405, 691, 699, 1033
DdeI CTNAG 3 cut(s) 186, 192, 1029
DpnI GATC 7 cut(s) 168, 293, 737, 821, 835, 976, 1063
DpnII GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
Eam1104I CTCTTC 2 cut(s) 220, 983
EarI CTCTTC 2 cut(s) 220, 983
Eco130I CCWWGG 2 cut(s) 852, 1057
Eco47I GGWCC 1 cut(s) 305
Eco47III AGCGCT 1 cut(s) 760
EcoO109I RGGNCCY 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 852, 1057
EcoT22I ATGCAT 1 cut(s) 868
ErhI CCWWGG 2 cut(s) 852, 1057
FaeI CATG 3 cut(s) 469, 749, 840
FaqI GGGAC 4 cut(s) 4, 119, 436, 820
FatI CATG 3 cut(s) 465, 745, 836
FauI CCCGC 1 cut(s) 742
FbaI TGATCA 2 cut(s) 291, 735
FblI GTMKAC 2 cut(s) 315, 1001
Fnu4HI GCNGC 4 cut(s) 81, 411, 564, 762
FokI GGATG 6 cut(s) 357, 467, 521, 853, 915, 1040
Fsp4HI GCNGC 4 cut(s) 81, 411, 564, 762
FspBI CTAG 3 cut(s) 147, 282, 1065
GlaI GCGC 3 cut(s) 436, 498, 760
GluI GCNGC 4 cut(s) 81, 411, 564, 762
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 3 cut(s) 105, 231, 923
HapII CCGG 6 cut(s) 92, 386, 506, 618, 816, 924
HgaI GACGC 1 cut(s) 690
HhaI GCGC 3 cut(s) 437, 499, 761
Hin1II CATG 3 cut(s) 469, 749, 840
Hin6I GCGC 3 cut(s) 435, 497, 759
HinP1I GCGC 3 cut(s) 435, 497, 759
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 3 cut(s) 108, 546, 726
HpaI GTTAAC 1 cut(s) 475
HpaII CCGG 6 cut(s) 92, 386, 506, 618, 816, 924
HphI GGTGA 2 cut(s) 58, 223
Hpy166II GTNNAC 8 cut(s) 266, 316, 475, 701, 790, 892, 963, 1002
Hpy188I TCNGA 3 cut(s) 166, 457, 731
Hpy188III TCNNGA 6 cut(s) 92, 238, 298, 331, 596, 900
Hpy8I GTNNAC 8 cut(s) 266, 316, 475, 701, 790, 892, 963, 1002
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 5 cut(s) 147, 319, 514, 644, 1095
HpyCH4III ACNGT 7 cut(s) 363, 368, 404, 427, 578, 590, 940
HpyCH4IV ACGT 3 cut(s) 132, 711, 928
HpyCH4V TGCA 6 cut(s) 80, 380, 764, 795, 866, 963
HpyF3I CTNAG 3 cut(s) 186, 192, 1029
HpySE526I ACGT 3 cut(s) 132, 711, 928
Hsp92II CATG 3 cut(s) 469, 749, 840
HspAI GCGC 3 cut(s) 435, 497, 759
Kpn2I TCCGGA 1 cut(s) 91
KpnI GGTACC 1 cut(s) 408
Ksp22I TGATCA 2 cut(s) 291, 735
KspAI GTTAAC 1 cut(s) 475
Kzo9I GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
LmnI GCTCC 2 cut(s) 524, 1077
Lsp1109I GCAGC 4 cut(s) 92, 422, 575, 748
LweI GCATC 2 cut(s) 67, 210
MaeI CTAG 3 cut(s) 147, 282, 1065
MaeII ACGT 3 cut(s) 132, 711, 928
MaeIII GTNAC 5 cut(s) 28, 71, 328, 799, 929
MalI GATC 7 cut(s) 168, 293, 737, 821, 835, 976, 1063
MboI GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
MboII GAAGA 3 cut(s) 237, 622, 1000
MflI RGATCY 3 cut(s) 166, 819, 1061
MhlI GDGCHC 2 cut(s) 529, 965
MluCI AATT 4 cut(s) 10, 87, 490, 581
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 8 cut(s) 32, 181, 221, 510, 704, 913, 1089, 1092
Mph1103I ATGCAT 1 cut(s) 868
MroI TCCGGA 1 cut(s) 91
MseI TTAA 2 cut(s) 474, 486
MslI CAYNNNNRTG 4 cut(s) 209, 375, 875, 901
MspA1I CMGCKG 1 cut(s) 185
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 6 cut(s) 92, 386, 506, 618, 816, 924
MspR9I CCNGG 2 cut(s) 309, 817
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 918
NciI CCSGG 1 cut(s) 817
NdeII GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
NlaIII CATG 3 cut(s) 469, 749, 840
NlaIV GGNNCC 3 cut(s) 406, 814, 1073
NmuCI GTSAC 2 cut(s) 328, 929
NsiI ATGCAT 1 cut(s) 868
PfeI GAWTC 3 cut(s) 108, 546, 726
PkrI GCNGC 4 cut(s) 82, 412, 565, 763
PpuMI RGGWCCY 1 cut(s) 305
Psp1406I AACGTT 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 406, 814, 1073
PspPI GGNCC 1 cut(s) 305
PspPPI RGGWCCY 1 cut(s) 305
PstI CTGCAG 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 3 cut(s) 166, 819, 1061
RsaI GTAC 6 cut(s) 267, 365, 406, 692, 700, 1034
RsaNI GTAC 6 cut(s) 266, 364, 405, 691, 699, 1033
RseI CAYNNNNRTG 4 cut(s) 209, 375, 875, 901
SaqAI TTAA 2 cut(s) 474, 486
SatI GCNGC 4 cut(s) 81, 411, 564, 762
Sau3AI GATC 7 cut(s) 166, 291, 735, 819, 833, 974, 1061
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 1034
ScrFI CCNGG 2 cut(s) 309, 817
SduI GDGCHC 2 cut(s) 529, 965
SfaNI GCATC 2 cut(s) 67, 210
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 4 cut(s) 209, 375, 875, 901
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 4 cut(s) 10, 87, 490, 581
SsiI CCGC 6 cut(s) 183, 408, 678, 749, 774, 916
SspMI CTAG 3 cut(s) 147, 282, 1065
StyD4I CCNGG 2 cut(s) 307, 815
StyI CCWWGG 2 cut(s) 852, 1057
TaaI ACNGT 7 cut(s) 363, 368, 404, 427, 578, 590, 940
TaiI ACGT 3 cut(s) 135, 714, 931
TaqI TCGA 5 cut(s) 111, 399, 429, 648, 832
TasI AATT 4 cut(s) 10, 87, 490, 581
TatI WGTACW 1 cut(s) 1032
TfiI GAWTC 3 cut(s) 108, 546, 726
Tru1I TTAA 2 cut(s) 474, 486
Tru9I TTAA 2 cut(s) 474, 486
TscAI CASTG 3 cut(s) 122, 366, 797
TseFI GTSAC 2 cut(s) 328, 929
TseI GCWGC 4 cut(s) 80, 410, 563, 761
Tsp45I GTSAC 2 cut(s) 328, 929
TspDTI ATGAA 4 cut(s) 343, 454, 655, 1027
TspGWI ACGGA 1 cut(s) 887
TspRI CASTG 3 cut(s) 122, 366, 797
Vha464I CTTAAG 1 cut(s) 485
VneI GTGCAC 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 2 cut(s) 490, 581
XmiI GTMKAC 2 cut(s) 315, 1001
XspI CTAG 3 cut(s) 147, 282, 1065
ZrmI AGTACT 1 cut(s) 1034
Zsp2I ATGCAT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.