Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345149.1

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1022

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

caagtggttcaaagacaatgtgaagccgttggcagaacagaagtcctcgcttgaccctgcccttgtcaaggcggaggagggtgatgccaaagttgtgaaggtcaagcaaaatgggggagactacaagaaaatctcggaggccattgatagcattccggccgggaacactaaacgtgtaattatatacattggagggggggacaacggaatgacggtgataaccgcacaggcaagggaaagtgatgaggacaacggatactcatttgttcactgcaacataaccgggaccggcaatggcacatatttgggcagggcttggagagctgctcccaaggtgttgtttgcctacaccaacatgggagaagttgtcaagccagaaggatggaccgacaatttccaccccga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

134

Amino Acids

14.58

Weight (kDa)

6.93

Isoelectric Point (pI)

17.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 223
AcoI	YGGCCR	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	112
AoxI	GGCC	2 cut(s)	139, 157
ApeKI	GCWGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	286, 385
AsuC2I	CCSGG	2 cut(s)	161, 284
AsuHPI	GGTGA	2 cut(s)	93, 227
AvaII	GGWCC	2 cut(s)	286, 385
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	249
BcnI	CCSGG	2 cut(s)	161, 284
BcoDI	GTCTC	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	161, 284
Bme18I	GGWCC	2 cut(s)	286, 385
BmgT120I	GGNCC	2 cut(s)	286, 385
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	161, 284
BmsI	GCATC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpuMI	CCSGG	2 cut(s)	161, 284
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	141, 159
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	4 cut(s)	156, 160, 283, 289
BslFI	GGGAC	2 cut(s)	213, 299
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	213, 299
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	141, 159
BspACI	CCGC	2 cut(s)	72, 223
BspANI	GGCC	2 cut(s)	141, 159
BspLI	GGNNCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	159, 282
BstV1I	GCAGC	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	141, 159
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	286, 385
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	26, 141, 159, 315, 324, 374
CviKI_1	RGCY	6 cut(s)	26, 141, 159, 315, 324, 374
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	286, 385
Eco52I	CGGCCG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	1 cut(s)	359
FaiI	YATR	5 cut(s)	183, 185, 279, 302, 357
FaqI	GGGAC	2 cut(s)	213, 299
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	141, 159
HapII	CCGG	4 cut(s)	156, 160, 283, 289
Hin1II	CATG	1 cut(s)	359
HpaII	CCGG	4 cut(s)	156, 160, 283, 289
HphI	GGTGA	2 cut(s)	93, 227
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	92, 372
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	359
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	8 cut(s)	70, 169, 173, 213, 296, 296, 302, 388
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	74
MaeII	ACGT	1 cut(s)	173
MluCI	AATT	2 cut(s)	178, 392
MnlI	CCTC	6 cut(s)	56, 68, 71, 131, 186, 239
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	4 cut(s)	156, 160, 283, 289
MspR9I	CCNGG	2 cut(s)	161, 284
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	161, 284
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	287
PctI	GAATGC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	286, 385
RseI	CAYNNNNRTG	1 cut(s)	354
SatI	GCNGC	1 cut(s)	325
Sau96I	GGNCC	2 cut(s)	286, 385
ScrFI	CCNGG	2 cut(s)	161, 284
SetI	ASST	4 cut(s)	103, 176, 326, 337
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	2 cut(s)	286, 385
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	178, 392
SsiI	CCGC	2 cut(s)	72, 223
StyD4I	CCNGG	2 cut(s)	159, 282
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	176
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	178, 392
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	1 cut(s)	324
TspGWI	ACGGA	2 cut(s)	220, 268
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	286, 385
XagI	CCTNNNNNAGG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.