FvH4_1g11590

Pectinesterase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
6336859 .. 6338582
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11590.t1

Sequence Viewer

Length: 1113 bp
ATGGCCGGAATAGAGAAACGGATGAGCATCCATGCAGCTCTGATGATGATCACGACGGTTCTCCTTGCTGCTACTGTTTCAATGGCAGATGATCCCGTCATACCTTCCGACAAATCAGCAGTGGACAAGTGGTTCCAGGACAATGTGAAGCCATTGGCAGACCGGAAGTCCTCGCTTGACCCTGACCTTGTCAAGGCGGAGGACGGTGATCCCAAAATTGTGAAGGTCATGGCAAATGGGGGAGACTTCAAGAAAATCTCAGAGGCCATTGATAGCATTCCAGCCAGTAACACTAAACGTGTGATTATATACGTTGGAGGGGGTGTCTACAATGAGAAAATTACAATTCCGAAAAACAAGCCATTTGTCACATTAATGGGGGATTCAAAAAACATGCCGAATCTTACCTTTAACGGTGATTCTGCCAAATATGGGACATTGTATAGTGCTACACTGTCGGTGGAATCTGACTACTTCGTCGGAGTGAATTTAAATATCATAAATTCCTCGCCGAGGCCGGATGGGAAAAAAGAGGGAGCACAAGCACTTGCCTTGAAGTTGTCTGGGAACAAGGCTGCATTGTACAATTGCCAAATGTTTGGATTTCAGGACACCCTTTGTGATGATCAAGGCAATCATTTCATCAAGGACTCCTACGTTGAAGGAACTGTAGATTTCATCTTCGGAAGTGGAAAATCTCTCTATTTGAACACACACATAAATGTGTTAGGAGACAGCGGAATGACGGTGATAACAGCAAATGCAAGAGAAGGTGATGAAGACAAGGGATACTCATTTGTCCACTGCAGCATAACCGGCACCGGCAGTGGCACATTTTTGGGCAGGGCTTGGAGGGCTGCTCCCAAGGTGACCTTTGCCTACACCGAAATGGGAGAAGTTGTCAAGCCAGAAGGATGGACCGACAATAACCACCCCGAATATGACAAGTCTGTTAGTTTTGGAGAGTACAAGAACACTGGTCCAGGTTCAAGCATGAGTAAGAGAGTAAGCTTCACGAAAGAGCTGAGCGATGCAGATGCCAAACCTTTCATCAGCCTAGGCTTTATTGACGGTTCCAAATGGTTGCTTCCTCCTCCAACTCCAAAGGTCTAA

Protein Analysis

371

Amino Acids

40.01

Weight (kDa)

5.82

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 79 - 358 2e-55 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 818
AccI GTMKAC 1 cut(s) 327
AciI CCGC 2 cut(s) 197, 738
AclWI GGATC 2 cut(s) 86, 203
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 487, 502
AfaI GTAC 2 cut(s) 584, 968
AfiI CCNNNNNNNGG 3 cut(s) 193, 432, 513
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 7 cut(s) 81, 250, 387, 556, 662, 709, 990
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 135, 982
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 38, 1011, 1024
AluI AGCT 3 cut(s) 38, 1011, 1024
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 2 cut(s) 237, 726
AlwI GGATC 2 cut(s) 86, 203
AoxI GGCC 3 cut(s) 3, 264, 515
ApeKI GCWGC 5 cut(s) 35, 68, 575, 807, 857
ApoI RAATTY 2 cut(s) 487, 502
AseI ATTAAT 1 cut(s) 374
AspA2I CCTAGG 1 cut(s) 1057
AspS9I GGNCC 2 cut(s) 918, 980
AsuHPI GGTGA 5 cut(s) 218, 428, 760, 785, 880
AvaII GGWCC 2 cut(s) 918, 980
AvrII CCTAGG 1 cut(s) 1057
BanI GGYRCC 1 cut(s) 818
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 5 cut(s) 47, 55, 562, 819, 844
BccI CCATC 2 cut(s) 515, 909
BcgI CGANNNNNNTGC 2 cut(s) 1019, 1053
BciT130I CCWGG 2 cut(s) 137, 984
BciVI GTATCC 1 cut(s) 782
BclI TGATCA 2 cut(s) 48, 625
BcoDI GTCTC 2 cut(s) 237, 726
BfaI CTAG 1 cut(s) 1058
BfmI CTRYAG 2 cut(s) 669, 805
BfuI GTATCC 1 cut(s) 782
BisI GCNGC 5 cut(s) 36, 69, 576, 808, 858
BlnI CCTAGG 1 cut(s) 1057
BlpI GCTNAGC 1 cut(s) 1025
BlsI GCNGC 5 cut(s) 37, 70, 577, 809, 859
Bme1390I CCNGG 2 cut(s) 137, 984
Bme18I GGWCC 2 cut(s) 918, 980
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 918, 980
BmiI GGNNCC 3 cut(s) 134, 820, 1075
BmrFI CCNGG 2 cut(s) 137, 984
BmsI GCATC 3 cut(s) 36, 1021, 1027
BpiI GAAGAC 1 cut(s) 786
BplI GAGNNNNNCTC 2 cut(s) 844, 876
Bpu1102I GCTNAGC 1 cut(s) 1025
BsaBI GATNNNNATC 2 cut(s) 26, 47
BsaJI CCNNGG 3 cut(s) 512, 864, 1057
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 885, 915
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 432, 513
Bse118I RCCGGY 2 cut(s) 815, 821
Bse1I ACTGG 2 cut(s) 285, 982
Bse8I GATNNNNATC 2 cut(s) 26, 47
BseBI CCWGG 2 cut(s) 137, 984
BseDI CCNNGG 3 cut(s) 512, 864, 1057
BseGI GGATG 4 cut(s) 27, 27, 526, 920
BseJI GATNNNNATC 2 cut(s) 26, 47
BseLI CCNNNNNNNGG 3 cut(s) 193, 432, 513
BseMII CTCAG 2 cut(s) 273, 1016
BseNI ACTGG 2 cut(s) 285, 982
BseRI GAGGAG 1 cut(s) 1083
BseXI GCAGC 5 cut(s) 47, 55, 562, 819, 844
BshFI GGCC 3 cut(s) 5, 266, 517
BshNI GGYRCC 1 cut(s) 818
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 5 cut(s) 6, 163, 518, 816, 822
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 193, 432, 513
BsmAI GTCTC 2 cut(s) 237, 726
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 3 cut(s) 5, 266, 517
Bsp1286I GDGCHC 1 cut(s) 541
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 4 cut(s) 48, 91, 208, 625
Bsp1720I GCTNAGC 1 cut(s) 1025
BspACI CCGC 2 cut(s) 197, 738
BspANI GGCC 3 cut(s) 5, 266, 517
BspCNI CTCAG 2 cut(s) 272, 1017
BspLI GGNNCC 3 cut(s) 134, 820, 1075
BspMAI CTGCAG 1 cut(s) 809
BspPI GGATC 2 cut(s) 86, 203
BspT107I GGYRCC 1 cut(s) 818
BsrFI RCCGGY 2 cut(s) 815, 821
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 2 cut(s) 285, 982
BssAI RCCGGY 2 cut(s) 815, 821
BssECI CCNNGG 3 cut(s) 512, 864, 1057
BssMI GATC 4 cut(s) 48, 91, 208, 625
BssT1I CCWWGG 2 cut(s) 864, 1057
Bst2UI CCWGG 2 cut(s) 137, 984
Bst4CI ACNGT 8 cut(s) 58, 76, 206, 416, 456, 670, 748, 1073
BstAUI TGTACA 1 cut(s) 582
BstDEI CTNAG 2 cut(s) 259, 1025
BstEII GGTNACC 1 cut(s) 868
BstENI CCTNNNNNAGG 2 cut(s) 191, 511
BstF5I GGATG 4 cut(s) 27, 27, 526, 920
BstKTI GATC 4 cut(s) 51, 94, 211, 628
BstMAI GTCTC 2 cut(s) 237, 726
BstMBI GATC 4 cut(s) 48, 91, 208, 625
BstMWI GCNNNNNNNGC 2 cut(s) 816, 854
BstNI CCWGG 2 cut(s) 137, 984
BstNSI RCATGY 1 cut(s) 397
BstPI GGTNACC 1 cut(s) 868
BstSCI CCNGG 2 cut(s) 135, 982
BstSFI CTRYAG 2 cut(s) 669, 805
BstV1I GCAGC 5 cut(s) 47, 55, 562, 819, 844
BstV2I GAAGAC 1 cut(s) 786
BstXI CCANNNNNNTGG 2 cut(s) 599, 915
BsuI GTATCC 1 cut(s) 782
BsuRI GGCC 3 cut(s) 5, 266, 517
BtgZI GCGATG 1 cut(s) 1044
BtsCI GGATG 4 cut(s) 27, 27, 526, 920
BtsI GCAGTG 3 cut(s) 126, 802, 832
BtsIMutI CAGTG 5 cut(s) 126, 452, 802, 832, 975
Cfr10I RCCGGY 2 cut(s) 815, 821
Cfr13I GGNCC 2 cut(s) 918, 980
Csp6I GTAC 2 cut(s) 583, 967
CviAII CATG 4 cut(s) 32, 229, 394, 994
CviQI GTAC 2 cut(s) 583, 967
DdeI CTNAG 2 cut(s) 259, 1025
DpnI GATC 4 cut(s) 50, 93, 210, 627
DpnII GATC 4 cut(s) 48, 91, 208, 625
DraI TTTAAA 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 476
DriI GACNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 166
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 864, 1057
Eco47I GGWCC 2 cut(s) 918, 980
Eco91I GGTNACC 1 cut(s) 868
EcoNI CCTNNNNNAGG 2 cut(s) 191, 511
EcoO65I GGTNACC 1 cut(s) 868
EcoRII CCWGG 2 cut(s) 135, 982
EcoT14I CCWWGG 2 cut(s) 864, 1057
ErhI CCWWGG 2 cut(s) 864, 1057
FaeI CATG 4 cut(s) 35, 232, 397, 997
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 1 cut(s) 448
FatI CATG 4 cut(s) 31, 228, 393, 993
FbaI TGATCA 2 cut(s) 48, 625
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 5 cut(s) 36, 69, 576, 808, 858
FokI GGATG 4 cut(s) 14, 34, 533, 927
Fsp4HI GCNGC 5 cut(s) 36, 69, 576, 808, 858
FspBI CTAG 1 cut(s) 1058
GluI GCNGC 5 cut(s) 36, 69, 576, 808, 858
HaeIII GGCC 3 cut(s) 5, 266, 517
HapII CCGG 5 cut(s) 6, 163, 518, 816, 822
Hin1II CATG 4 cut(s) 35, 232, 397, 997
HindIII AAGCTT 1 cut(s) 1009
HinfI GANTC 5 cut(s) 383, 400, 419, 464, 650
HpaII CCGG 5 cut(s) 6, 163, 518, 816, 822
HphI GGTGA 5 cut(s) 218, 428, 760, 785, 880
Hpy166II GTNNAC 3 cut(s) 124, 328, 802
Hpy188I TCNGA 7 cut(s) 42, 109, 262, 351, 469, 482, 686
Hpy188III TCNNGA 4 cut(s) 52, 250, 608, 1015
Hpy8I GTNNAC 3 cut(s) 124, 328, 802
Hpy99I CGWCG 2 cut(s) 58, 482
HpyAV CCTTC 5 cut(s) 114, 217, 656, 764, 905
HpyCH4III ACNGT 8 cut(s) 58, 76, 206, 416, 456, 670, 748, 1073
HpyCH4IV ACGT 3 cut(s) 298, 312, 657
HpyCH4V TGCA 5 cut(s) 35, 578, 764, 807, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 816, 854
HpyF3I CTNAG 2 cut(s) 259, 1025
HpySE526I ACGT 3 cut(s) 298, 312, 657
Hsp92II CATG 4 cut(s) 35, 232, 397, 997
Ksp22I TGATCA 2 cut(s) 48, 625
Kzo9I GATC 4 cut(s) 48, 91, 208, 625
LmnI GCTCC 2 cut(s) 536, 865
Lsp1109I GCAGC 5 cut(s) 47, 55, 562, 819, 844
LweI GCATC 3 cut(s) 36, 1021, 1027
MaeI CTAG 1 cut(s) 1058
MaeII ACGT 3 cut(s) 298, 312, 657
MaeIII GTNAC 3 cut(s) 287, 367, 868
MalI GATC 4 cut(s) 50, 93, 210, 627
MboI GATC 4 cut(s) 48, 91, 208, 625
MboII GAAGA 2 cut(s) 673, 791
MfeI CAATTG 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 6 cut(s) 216, 339, 345, 487, 502, 586
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 3 cut(s) 132, 295, 460
MseI TTAA 3 cut(s) 374, 411, 491
MslI CAYNNNNRTG 4 cut(s) 374, 720, 722, 887
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 5 cut(s) 6, 163, 518, 816, 822
MspR9I CCNGG 2 cut(s) 137, 984
MunI CAATTG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 2 cut(s) 137, 984
MwoI GCNNNNNNNGC 2 cut(s) 816, 854
NdeII GATC 4 cut(s) 48, 91, 208, 625
NlaIII CATG 4 cut(s) 35, 232, 397, 997
NlaIV GGNNCC 3 cut(s) 134, 820, 1075
NmeAIII GCCGAG 1 cut(s) 537
NmuCI GTSAC 2 cut(s) 367, 868
NspI RCATGY 1 cut(s) 397
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 4 cut(s) 383, 400, 419, 464
PflFI GACNNNGTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 5 cut(s) 37, 70, 577, 809, 859
PleI GAGTC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
PshBI ATTAAT 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 135, 982
PspEI GGTNACC 1 cut(s) 868
PspGI CCWGG 2 cut(s) 135, 982
PspN4I GGNNCC 3 cut(s) 134, 820, 1075
PspPI GGNCC 2 cut(s) 918, 980
PstI CTGCAG 1 cut(s) 809
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 2 cut(s) 584, 968
RsaNI GTAC 2 cut(s) 583, 967
RseI CAYNNNNRTG 4 cut(s) 374, 720, 722, 887
SaqAI TTAA 3 cut(s) 374, 411, 491
SatI GCNGC 5 cut(s) 36, 69, 576, 808, 858
Sau3AI GATC 4 cut(s) 48, 91, 208, 625
Sau96I GGNCC 2 cut(s) 918, 980
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 137, 984
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 3 cut(s) 36, 1021, 1027
SfcI CTRYAG 2 cut(s) 669, 805
SinI GGWCC 2 cut(s) 918, 980
SmiI ATTTAAAT 1 cut(s) 492
SmiMI CAYNNNNRTG 4 cut(s) 374, 720, 722, 887
Sse9I AATT 6 cut(s) 216, 339, 345, 487, 502, 586
SsiI CCGC 2 cut(s) 197, 738
SspMI CTAG 1 cut(s) 1058
StyD4I CCNGG 2 cut(s) 135, 982
StyI CCWWGG 2 cut(s) 864, 1057
SwaI ATTTAAAT 1 cut(s) 492
TaaI ACNGT 8 cut(s) 58, 76, 206, 416, 456, 670, 748, 1073
TaiI ACGT 3 cut(s) 301, 315, 660
TaqII GACCGA 1 cut(s) 935
TasI AATT 6 cut(s) 216, 339, 345, 487, 502, 586
TatI WGTACW 2 cut(s) 582, 966
TfiI GAWTC 4 cut(s) 383, 400, 419, 464
Tru1I TTAA 3 cut(s) 374, 411, 491
Tru9I TTAA 3 cut(s) 374, 411, 491
TscAI CASTG 5 cut(s) 126, 459, 809, 832, 982
TseFI GTSAC 2 cut(s) 367, 868
TseI GCWGC 5 cut(s) 35, 68, 575, 807, 857
Tsp45I GTSAC 2 cut(s) 367, 868
TspDTI ATGAA 4 cut(s) 631, 667, 792, 1039
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 5 cut(s) 126, 459, 809, 832, 982
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 918, 980
VspI ATTAAT 1 cut(s) 374
XagI CCTNNNNNAGG 2 cut(s) 191, 511
XapI RAATTY 2 cut(s) 487, 502
XceI RCATGY 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 1057
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.