Rw2G007790

pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
7626165 .. 7628583
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007790.1

Sequence Viewer

Length: 1125 bp
ATGAGATCGACACCCGCTCTTGTGGTCGTTGCGGCATTTCTGGCTCTCCATTTCGTGCCTTTGCTCGTGTCAGGCCACCCCAACCTCATTCCGGAAAACGAGTCTGATCTCGATGGCTGGATCGTCCAAAACATGAGGGAGTACAACGAGCGGAAAGCCGAGCTGAGGACCAGGAGCAACGTCCCCGGCACGCACTTCGACACAGGGCTCGCCGCCGCCGAGGACGCAAAGAGAGTCATCCGGGTGAAGCAGGACGGCACCGGAGACTTTAGGAAGGTGACGGACGCCGTGAGGAGCATTCCGTCTGCAAACAAGCAGCGCGTGGTGGTGTGGATTGGCGGGGGAGAGTACAGGGAGAAGGTTCTGGTGGACGTGACGAAGCCGTACGTGACGTTTTTTGGGGACAAGAACAACATCCCGTCGATCACCTACGACGGCACGGCTGCCGTGTACGGGACGTGGAACAGTGCCACGGTGGCGGTGGAAGCCGACTATTTCATGGCCGTGAATATAGCGTTCGTGAATTCAGCTCCTATGCCGGACGGCATAAGGAAAGGTGCACAGGCGGTGGCAATGAGAATATCAGGGGATAAGGCAGCCTTCCACAACTGCAGGTTCATCGGATTTCAGGACACCTTATGTGACGATAGGGGAAGGCATTTCTTCAAGGATTGCTTCATCCAAGGCACTGTTGATTTCATCTTTGGCAATGGAAAATCCCTCTACTTGAAAAGTACCTTAAACTCAGTTGCGAATGGAAATGGGGTGATCACGGCACATGGTAGAGCAGATGTGCAGGATGATAGCGGATTTTCGTTTGTGTATTGCAACATAACGGGGACAGGTGAGACCTTGCTTGGGCGTGCTTGGAGGGGAAGAGCAAGAGTGGTGTTTTCTTACACATACATGGGGAACCTAGTCGACAGAGAAGGGTGGTCCGACTACAACGACAGTGCGCGTGCCAACACTGTGTATTATGGAGAATACAAATGTTCTGGACCGGGTTCAAGCTCCATCCATCGAGTCAAGTATGCAAGGATGCTGACTGATATAGAAGCAAAACCCTTCATCAGCCTGACTTTCATCCAAGGAACGAAATGGGTTCTTCCCCCTCCCAACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

374

Amino Acids

41.3

Weight (kDa)

8.67

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 81 - 364 3.8e-69 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AccB1I GGYRCC 1 cut(s) 257
AccBSI CCGCTC 2 cut(s) 17, 151
AccI GTMKAC 1 cut(s) 921
AccII CGCG 2 cut(s) 321, 958
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 9 cut(s) 15, 32, 151, 213, 216, 339, 479, 566, 807
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 1 cut(s) 523
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 5 cut(s) 143, 350, 386, 452, 736
AfiI CCNNNNNNNGG 4 cut(s) 91, 165, 453, 858
AgsI TTSAA 3 cut(s) 667, 730, 1008
AjiI CACGTC 2 cut(s) 373, 459
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 3 cut(s) 163, 530, 1011
AluI AGCT 3 cut(s) 163, 530, 1011
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 2 cut(s) 258, 842
Alw44I GTGCAC 1 cut(s) 558
AlwI GGATC 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 2 cut(s) 73, 501
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 316, 443, 596
ApoI RAATTY 1 cut(s) 523
AspLEI GCGC 2 cut(s) 321, 958
AspS9I GGNCC 3 cut(s) 168, 936, 998
AsuC2I CCSGG 3 cut(s) 186, 242, 1002
AsuHPI GGTGA 5 cut(s) 256, 289, 418, 778, 857
AvaII GGWCC 3 cut(s) 168, 936, 998
BaeGI GKGCMC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 210
BauI CACGAG 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 562
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 328, 430, 608
BccI CCATC 3 cut(s) 107, 1022, 1026
BceAI ACGGC 9 cut(s) 271, 272, 367, 431, 451, 456, 488, 559, 789
BcgI CGANNNNNNTGC 4 cut(s) 178, 212, 601, 635
BciT130I CCWGG 1 cut(s) 172
BclI TGATCA 1 cut(s) 768
BcnI CCSGG 3 cut(s) 186, 242, 1002
BcoDI GTCTC 2 cut(s) 258, 842
BfaI CTAG 2 cut(s) 917, 1123
BfmI CTRYAG 1 cut(s) 610
BfuAI ACCTGC 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 476
BisI GCNGC 6 cut(s) 33, 213, 216, 317, 444, 597
BlsI GCNGC 6 cut(s) 34, 214, 217, 318, 445, 598
Bme1390I CCNGG 4 cut(s) 172, 186, 242, 1002
Bme18I GGWCC 3 cut(s) 168, 936, 998
BmgBI CACGTC 2 cut(s) 373, 459
BmgT120I GGNCC 3 cut(s) 168, 936, 998
BmiI GGNNCC 2 cut(s) 259, 914
BmrFI CCNGG 4 cut(s) 172, 186, 242, 1002
BmsI GCATC 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 164
BpuMI CCSGG 3 cut(s) 186, 242, 1002
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 5 cut(s) 184, 219, 471, 682, 1087
BsaWI WCCGGW 2 cut(s) 91, 260
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 165, 453, 858
Bse3DI GCAATG 2 cut(s) 579, 715
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 5 cut(s) 184, 219, 471, 682, 1087
BseGI GGATG 7 cut(s) 237, 414, 678, 805, 1014, 1044, 1083
BseLI CCNNNNNNNGG 4 cut(s) 91, 165, 453, 858
BseMI GCAATG 2 cut(s) 579, 715
BseMII CTCAG 2 cut(s) 155, 759
BseRI GAGGAG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 3 cut(s) 328, 430, 608
BsgI GTGCAG 1 cut(s) 815
Bsh1236I CGCG 2 cut(s) 321, 958
BshFI GGCC 2 cut(s) 75, 503
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 6 cut(s) 92, 186, 241, 261, 539, 1001
BsiWI CGTACG 1 cut(s) 384
BslFI GGGAC 4 cut(s) 167, 416, 469, 853
BslI CCNNNNNNNGG 4 cut(s) 91, 165, 453, 858
BsmAI GTCTC 2 cut(s) 258, 842
BsmFI GGGAC 4 cut(s) 167, 416, 469, 853
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 75, 503
Bso31I GGTCTC 1 cut(s) 842
Bsp1286I GDGCHC 2 cut(s) 210, 562
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 5 cut(s) 5, 106, 120, 423, 768
BspACI CCGC 9 cut(s) 15, 32, 151, 213, 216, 339, 479, 566, 807
BspANI GGCC 2 cut(s) 75, 503
BspCNI CTCAG 2 cut(s) 156, 758
BspEI TCCGGA 1 cut(s) 91
BspFNI CGCG 2 cut(s) 321, 958
BspLI GGNNCC 2 cut(s) 259, 914
BspMAI CTGCAG 1 cut(s) 614
BspMI ACCTGC 1 cut(s) 603
BspPI GGATC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 871
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 842
BsrBI CCGCTC 2 cut(s) 17, 151
BsrDI GCAATG 2 cut(s) 579, 715
BssECI CCNNGG 5 cut(s) 184, 219, 471, 682, 1087
BssMI GATC 5 cut(s) 5, 106, 120, 423, 768
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 2 cut(s) 682, 1087
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 5 cut(s) 467, 475, 691, 953, 970
Bst6I CTCTTC 1 cut(s) 871
BstACI GRCGYC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 191, 210, 864, 960
BstDEI CTNAG 2 cut(s) 164, 745
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 7 cut(s) 237, 414, 678, 805, 1014, 1044, 1083
BstFNI CGCG 2 cut(s) 321, 958
BstHHI GCGC 2 cut(s) 321, 958
BstKTI GATC 5 cut(s) 8, 109, 123, 426, 771
BstMAI GTCTC 2 cut(s) 258, 842
BstMBI GATC 5 cut(s) 5, 106, 120, 423, 768
BstMWI GCNNNNNNNGC 4 cut(s) 41, 224, 476, 485
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 4 cut(s) 170, 184, 240, 1000
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 1 cut(s) 562
BstUI CGCG 2 cut(s) 321, 958
BstV1I GCAGC 3 cut(s) 328, 430, 608
BsuRI GGCC 2 cut(s) 75, 503
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 2 cut(s) 373, 459
BtsCI GGATG 7 cut(s) 237, 414, 678, 805, 1014, 1044, 1083
BtsIMutI CAGTG 4 cut(s) 472, 687, 958, 966
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 4 cut(s) 191, 210, 864, 960
CfoI GCGC 2 cut(s) 321, 958
Cfr13I GGNCC 3 cut(s) 168, 936, 998
CseI GACGC 2 cut(s) 233, 293
Csp6I GTAC 5 cut(s) 142, 349, 385, 451, 735
CviAII CATG 4 cut(s) 133, 499, 779, 907
CviQI GTAC 5 cut(s) 142, 349, 385, 451, 735
DdeI CTNAG 2 cut(s) 164, 745
DpnI GATC 5 cut(s) 7, 108, 122, 425, 770
DpnII GATC 5 cut(s) 5, 106, 120, 423, 768
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 871
EarI CTCTTC 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 682, 1087
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 842
Eco47I GGWCC 3 cut(s) 168, 936, 998
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 682, 1087
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 682, 1087
FaeI CATG 4 cut(s) 136, 502, 782, 910
FalI AAGNNNNNCTT 4 cut(s) 584, 616, 659, 691
FaqI GGGAC 4 cut(s) 167, 416, 469, 853
FatI CATG 4 cut(s) 132, 498, 778, 906
FauI CCCGC 2 cut(s) 22, 332
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 6 cut(s) 33, 213, 216, 317, 444, 597
FokI GGATG 7 cut(s) 224, 401, 665, 812, 1001, 1051, 1070
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 6 cut(s) 33, 213, 216, 317, 444, 597
FspBI CTAG 2 cut(s) 917, 1123
GlaI GCGC 2 cut(s) 320, 957
GluI GCNGC 6 cut(s) 33, 213, 216, 317, 444, 597
HaeIII GGCC 2 cut(s) 75, 503
HapII CCGG 6 cut(s) 92, 186, 241, 261, 539, 1001
HgaI GACGC 2 cut(s) 233, 293
HhaI GCGC 2 cut(s) 321, 958
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 4 cut(s) 136, 502, 782, 910
Hin6I GCGC 2 cut(s) 319, 956
HinP1I GCGC 2 cut(s) 319, 956
HincII GTYRAC 1 cut(s) 922
HindII GTYRAC 1 cut(s) 922
HinfI GANTC 3 cut(s) 101, 234, 1023
HpaII CCGG 6 cut(s) 92, 186, 241, 261, 539, 1001
HphI GGTGA 5 cut(s) 256, 289, 418, 778, 857
Hpy166II GTNNAC 4 cut(s) 370, 451, 560, 922
Hpy188I TCNGA 3 cut(s) 106, 623, 940
Hpy188III TCNNGA 5 cut(s) 92, 110, 520, 629, 996
Hpy8I GTNNAC 4 cut(s) 370, 451, 560, 922
Hpy99I CGWCG 2 cut(s) 424, 437
HpyAV CCTTC 6 cut(s) 268, 352, 610, 648, 923, 1075
HpyCH4III ACNGT 5 cut(s) 467, 475, 691, 953, 970
HpyCH4IV ACGT 5 cut(s) 180, 372, 387, 392, 458
HpyCH4V TGCA 6 cut(s) 308, 560, 612, 796, 828, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 224, 476, 485
HpyF3I CTNAG 2 cut(s) 164, 745
HpySE526I ACGT 5 cut(s) 180, 372, 387, 392, 458
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 4 cut(s) 136, 502, 782, 910
HspAI GCGC 2 cut(s) 319, 956
Kpn2I TCCGGA 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 5 cut(s) 5, 106, 120, 423, 768
LguI GCTCTTC 1 cut(s) 871
LmnI GCTCC 4 cut(s) 174, 294, 535, 1016
Lsp1109I GCAGC 3 cut(s) 328, 430, 608
LweI GCATC 1 cut(s) 1029
MaeI CTAG 2 cut(s) 917, 1123
MaeII ACGT 5 cut(s) 180, 372, 387, 392, 458
MaeIII GTNAC 4 cut(s) 277, 373, 388, 641
MalI GATC 5 cut(s) 7, 108, 122, 425, 770
MbiI CCGCTC 2 cut(s) 17, 151
MboI GATC 5 cut(s) 5, 106, 120, 423, 768
MboII GAAGA 3 cut(s) 655, 888, 1097
MhlI GDGCHC 2 cut(s) 210, 562
MluCI AATT 1 cut(s) 523
MlyI GAGTC 3 cut(s) 110, 243, 1032
MmeI TCCRAC 1 cut(s) 963
MnlI CCTC 8 cut(s) 95, 129, 159, 214, 285, 731, 864, 1122
MroI TCCGGA 1 cut(s) 91
MseI TTAA 1 cut(s) 740
MslI CAYNNNNRTG 3 cut(s) 242, 503, 905
MspI CCGG 6 cut(s) 92, 186, 241, 261, 539, 1001
MspR9I CCNGG 4 cut(s) 172, 186, 242, 1002
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 2 cut(s) 321, 958
MwoI GCNNNNNNNGC 4 cut(s) 41, 224, 476, 485
NciI CCSGG 3 cut(s) 186, 242, 1002
NdeII GATC 5 cut(s) 5, 106, 120, 423, 768
NlaIII CATG 4 cut(s) 136, 502, 782, 910
NlaIV GGNNCC 2 cut(s) 259, 914
NmeAIII GCCGAG 2 cut(s) 184, 244
NmuCI GTSAC 4 cut(s) 277, 373, 388, 641
PciSI GCTCTTC 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 297
Pfl23II CGTACG 1 cut(s) 384
PkrI GCNGC 6 cut(s) 34, 214, 217, 318, 445, 598
PleI GAGTC 3 cut(s) 109, 242, 1031
PpsI GAGTC 3 cut(s) 109, 242, 1031
Ppu21I YACGTR 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 259, 914
PspPI GGNCC 3 cut(s) 168, 936, 998
PstI CTGCAG 1 cut(s) 614
RsaI GTAC 5 cut(s) 143, 350, 386, 452, 736
RsaNI GTAC 5 cut(s) 142, 349, 385, 451, 735
RseI CAYNNNNRTG 3 cut(s) 242, 503, 905
SalI GTCGAC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 871
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 6 cut(s) 33, 213, 216, 317, 444, 597
Sau3AI GATC 5 cut(s) 5, 106, 120, 423, 768
Sau96I GGNCC 3 cut(s) 168, 936, 998
SchI GAGTC 3 cut(s) 110, 243, 1032
ScrFI CCNGG 4 cut(s) 172, 186, 242, 1002
SduI GDGCHC 2 cut(s) 210, 562
SfaNI GCATC 1 cut(s) 1029
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 3 cut(s) 168, 936, 998
SmiMI CAYNNNNRTG 3 cut(s) 242, 503, 905
Sse9I AATT 1 cut(s) 523
SsiI CCGC 9 cut(s) 15, 32, 151, 213, 216, 339, 479, 566, 807
SspMI CTAG 2 cut(s) 917, 1123
StyD4I CCNGG 4 cut(s) 170, 184, 240, 1000
StyI CCWWGG 2 cut(s) 682, 1087
TaaI ACNGT 5 cut(s) 467, 475, 691, 953, 970
TaiI ACGT 5 cut(s) 183, 375, 390, 395, 461
TaqI TCGA 6 cut(s) 8, 111, 198, 422, 921, 1021
TasI AATT 1 cut(s) 523
TatI WGTACW 2 cut(s) 141, 348
TauI GCSGC 3 cut(s) 35, 215, 218
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 4 cut(s) 472, 694, 958, 973
TseFI GTSAC 4 cut(s) 277, 373, 388, 641
TseI GCWGC 3 cut(s) 316, 443, 596
Tsp45I GTSAC 4 cut(s) 277, 373, 388, 641
TspDTI ATGAA 6 cut(s) 487, 607, 667, 688, 1057, 1072
TspGWI ACGGA 2 cut(s) 291, 296
TspRI CASTG 4 cut(s) 472, 694, 958, 973
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 3 cut(s) 168, 936, 998
XapI RAATTY 1 cut(s) 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 2 cut(s) 917, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.