Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000425.1

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Forward (+)

68788 .. 69554

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000425.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgatgatcacgacgattctccttgctgctactgtttccatggcggatggtgatgcagtcgtaccagccggaaaatccgaactggacaagtggttcaacaacaatgtgaagccgttcaaagaacaaaagtcgcttgacgctgcccttgtcacggcggaggagggtgcgaaagttgtgaaggtcatgcaagatgggggagactacaagaaaatcatggaggccattgatagcattccggccgggaacactaaacgtgtgattgtatacattggagggggtacctacaatgagaaaataacaattccaaaaaacaaaccatttgtcacattagttggggattcaaaaaacattccgaatttgacatattccggtgatgccgccaaatatgggacggtgaatagtgctacattggcagtggaatccgactacttcactgctgctaacttaaatatcataaattcctcgccaaaaccagatggaaaaagagaaggcgcacaagcagttgccttgagggtgtccgggaccaaggccgcattgtacaattgcaaaatgtatggatttcaggacaccatttgtgatgataaaggctatcatttcttcaaggactgctacgttgaaggaactgtagatttcatcttcggaagtggaaaatctctctgctggaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

222

Amino Acids

23.96

Weight (kDa)

7.55

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	4 cut(s)	44, 155, 378, 531
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	355, 457
AfaI	GTAC	3 cut(s)	63, 280, 539
AfiI	CCNNNNNNNGG	2 cut(s)	151, 387
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	5 cut(s)	97, 118, 342, 601, 617
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
Alw26I	GTCTC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	219, 237, 528
ApeKI	GCWGC	3 cut(s)	26, 140, 437
ApoI	RAATTY	2 cut(s)	355, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	113
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	2 cut(s)	241, 520
AsuHPI	GGTGA	3 cut(s)	62, 383, 406
AvaII	GGWCC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	278
BbvI	GCAGC	3 cut(s)	13, 127, 424
BccI	CCATC	3 cut(s)	41, 185, 470
BceAI	ACGGC	2 cut(s)	97, 168
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	2 cut(s)	241, 520
BcoDI	GTCTC	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	5 cut(s)	27, 141, 378, 438, 531
BlsI	GCNGC	5 cut(s)	28, 142, 379, 439, 532
Bme1390I	CCNGG	2 cut(s)	241, 520
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	2 cut(s)	280, 523
BmrFI	CCNGG	2 cut(s)	241, 520
BmsI	GCATC	2 cut(s)	43, 364
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	2 cut(s)	241, 520
BsaJI	CCNNGG	2 cut(s)	39, 525
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 387
Bse1I	ACTGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	39, 525
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	151, 387
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	173
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	3 cut(s)	13, 127, 424
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	221, 239, 530
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	5 cut(s)	69, 236, 240, 369, 519
BslFI	GGGAC	2 cut(s)	403, 535
BslI	CCNNNNNNNGG	2 cut(s)	151, 387
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	403, 535
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	221, 239, 530
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	4 cut(s)	44, 155, 378, 531
BspANI	GGCC	3 cut(s)	221, 239, 530
BspLI	GGNNCC	2 cut(s)	280, 523
BspT107I	GGYRCC	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	39, 525
BssMI	GATC	1 cut(s)	6
BssNAI	GTATAC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	39, 525
Bst1107I	GTATAC	1 cut(s)	265
Bst4CI	ACNGT	3 cut(s)	34, 394, 625
BstAUI	TGTACA	1 cut(s)	537
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	6
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	239, 518
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	13, 127, 424
BstZ17I	GTATAC	1 cut(s)	265
BstZI	CGGCCG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	221, 239, 530
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	2 cut(s)	420, 432
BtsIMutI	CAGTG	2 cut(s)	420, 432
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	522
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	62, 279, 538
CviAII	CATG	3 cut(s)	40, 184, 214
CviJI	RGCY	6 cut(s)	68, 112, 221, 239, 530, 588
CviKI_1	RGCY	6 cut(s)	68, 112, 221, 239, 530, 588
CviQI	GTAC	3 cut(s)	62, 279, 538
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
EciI	GGCGGA	2 cut(s)	59, 170
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	39, 525
Eco47I	GGWCC	1 cut(s)	522
Eco52I	CGGCCG	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	39, 525
ErhI	CCWWGG	2 cut(s)	39, 525
FaeI	CATG	3 cut(s)	43, 187, 217
FaiI	YATR	8 cut(s)	41, 185, 215, 265, 364, 387, 455, 555
FaqI	GGGAC	2 cut(s)	403, 535
FatI	CATG	3 cut(s)	39, 183, 213
FbaI	TGATCA	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	5 cut(s)	27, 141, 378, 438, 531
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	27, 141, 378, 438, 531
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	5 cut(s)	27, 141, 378, 438, 531
HaeIII	GGCC	3 cut(s)	221, 239, 530
HapII	CCGG	5 cut(s)	69, 236, 240, 369, 519
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	43, 187, 217
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	3 cut(s)	16, 338, 419
HpaII	CCGG	5 cut(s)	69, 236, 240, 369, 519
HphI	GGTGA	3 cut(s)	62, 383, 406
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	79, 354, 424, 641
Hpy188III	TCNNGA	2 cut(s)	10, 563
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	172, 482, 611
HpyCH4III	ACNGT	3 cut(s)	34, 394, 625
HpyCH4IV	ACGT	2 cut(s)	253, 612
HpyCH4V	TGCA	3 cut(s)	56, 187, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	253, 612
Hsp92II	CATG	3 cut(s)	43, 187, 217
HspAI	GCGC	1 cut(s)	492
KpnI	GGTACC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	6
Lsp1109I	GCAGC	3 cut(s)	13, 127, 424
LweI	GCATC	2 cut(s)	43, 364
MaeII	ACGT	2 cut(s)	253, 612
MaeIII	GTNAC	2 cut(s)	148, 322
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	589, 628
MfeI	CAATTG	1 cut(s)	541
MluCI	AATT	4 cut(s)	300, 355, 457, 541
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	6 cut(s)	151, 154, 211, 266, 472, 504
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	446
MspI	CCGG	5 cut(s)	69, 236, 240, 369, 519
MspR9I	CCNGG	2 cut(s)	241, 520
MunI	CAATTG	1 cut(s)	541
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	2 cut(s)	241, 520
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	43, 187, 217
NlaIV	GGNNCC	2 cut(s)	280, 523
NmuCI	GTSAC	2 cut(s)	148, 322
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	16, 338, 419
PfoI	TCCNGGA	1 cut(s)	518
PkrI	GCNGC	5 cut(s)	28, 142, 379, 439, 532
PspN4I	GGNNCC	2 cut(s)	280, 523
PspPI	GGNCC	1 cut(s)	522
RsaI	GTAC	3 cut(s)	63, 280, 539
RsaNI	GTAC	3 cut(s)	62, 279, 538
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	5 cut(s)	27, 141, 378, 438, 531
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	522
ScrFI	CCNGG	2 cut(s)	241, 520
SetI	ASST	4 cut(s)	183, 256, 284, 615
SfaNI	GCATC	2 cut(s)	43, 364
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	4 cut(s)	300, 355, 457, 541
SsiI	CCGC	4 cut(s)	44, 155, 378, 531
StyD4I	CCNGG	2 cut(s)	239, 518
StyI	CCWWGG	2 cut(s)	39, 525
TaaI	ACNGT	3 cut(s)	34, 394, 625
TaiI	ACGT	2 cut(s)	256, 615
TasI	AATT	4 cut(s)	300, 355, 457, 541
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	2 cut(s)	380, 533
TfiI	GAWTC	3 cut(s)	16, 338, 419
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	2 cut(s)	420, 439
TseFI	GTSAC	2 cut(s)	148, 322
TseI	GCWGC	3 cut(s)	26, 140, 437
Tsp45I	GTSAC	2 cut(s)	148, 322
TspDTI	ATGAA	1 cut(s)	622
TspRI	CASTG	2 cut(s)	420, 439
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	355, 457
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.