Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

48949502 .. 48954063

Gene Structure 4562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0375500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4398 bp

ATGGGGCGTCTAAAGGTGCAAAGTGGGATCAAGGCAGTTGAGGGAGAACCCAAGGACTCTGATGGAATATATTCCGACAAAGCTACTTTAGCATGCATCATTAACTCAGAAATAGGTACTGTATTAGCGGTTATGAGGAGGAATGTAAGATGGGGGGGACGGTATGCATCGGATGATGATCAGATGGAACACTCTCTAATCCAGTCTTTGAAGGCTTTGCGCAAGAAAATTTTTTCGTGGCAGCATCAGTTGAATAGCATCAGTCCAGCTGTGTATCTCAAGCCATTTCTGGATGTGATTAGATCTGACGAAACTGGTGCACCAATCACTGGTGTTGCTCTGGCATCTGTGTACAATATCTTAACACTGGATGTGATTGATCAGAACTCTGTCAACGTTGAAGATGCTATGCACTTGTTAGTTGATGCCATCACTGGCTGCCGATTTGAGGTGACTGACCCTGCATCAGAAGAAGTGGTACTTATGAAGATACTACAGGTTCTTCTGGCTTGCATGAAGAGTAAAGCATCTTTTATGTTGAGTAATCAGCAGGTTTGCACTATAGTGAATACATGTTTCCGTATAGTTCATCAAGCAGGAACAAAAGGTGAGTTGTTGCAACGGATAGCTCGCCACACAATGCATGAGCTTGTTAGATGTATTTTCTCACACCTTCCAGATATCCGCAGCACCGAAAATGCATTGTCAAATGGAAGCAATTCCCTCAAACAAGAGACTTCAGGGCGCAATAATGAGCATGCACTTGAGAGTAGACAATTGGATAATGGCAGCATTAGTTCTGAGTATGACAGTCAACTATTATCCACAAATCCTGCTTTGCATGCTTCACCAGGCATTGTAGAATCTGTGATGGGTGAGAGGACAACCGGGGCTTCTGACAGGAAAGATGCTGTGCAAAATGACTTGAATCTCATGACTGAGCCTTTTGGGGTTCCCAGCATGGTGGAAATTTTTCAGTTTCTTTGTTCTTTATTAAACGTTGTTGAGCATATAGGATCGGGTCCTAAATCTAATCCCATAGCATTTGATGAAGATGTGCCTCTTTTTGCCTTGACCCTGGTTAATTCGGCTATAGAGTTGGGTGGGTCCTCCATTCAGCATCACCCCAAGTTATTGAGTTTGGTTCGGGATGAATTGTTTCAAAATCTAATGCAATTTGGCCTGTCAACGAGCCCACTTATTCTTTCAATGGTATGCAGCATTGTTCTTAATTTGTATCACCATCTGCGCACTGAACTTAAACTACAGCTTGAGGCTTTCTTTTCCTGCGTGATACTGAGGCTTGCACAAAGTAGGTATGGAGCTTCTTATCAACAGCAGGAGGTGGCCATGGAAGCTCTAGTTGATTTCTGCAGGCAGAAAAATTTCATGGTGGAGATGTATGCTAATTTAGATTGTGACATAACTTGCAGTAATATCTTTGAAGAGCTTGCTAATCTGTTGTCAAAGAGTGCATTCCCAGTTAATAGCCCTTTGTCTTCCTTTCACATTCTTGCTTTGGATGGCCTTATTGCTGTTATTCAGGCAATGACAGAGAGGGTAGAGAATGGATCTTATAGTTTATCTCATACTCCAGTGACTCTTGAGGAGTATACTCCATTCTGGATGGTGAAGTGTGACAACTACAGTGATCCTAATCATTGGGTTCCATTTGTTCGCCAGACGAAGTACATAAAGCGAAGGTTGATAACTGGTGCCGATCATTTTAACCATGACCCAAAGAAAGGGCTGGAATTCCTCCAAGGAATTCATCTCTTGCCTGAGAAACTTGATCCTCAAAGTGTGGCATGCTTTTTCAGGTATACGGCTGGGTTAGACAAGAATCTTATTGGGGATTTCTTGGGAAATCATGATGACTTTTGCATTCAGGTTCTTCATAAATTTGCTGGTACCTTTGATTTCCAAGATATGAACTTGGATACTGCACTCCGCCTTTTTTTGGAAACTTTTAGATTGCCTGGTGAATCACAGAAAATACAGAGGGTGCTTGAAGCATTCTCAGAGAGATACTATGAGCAATCCCCACTAATTCTAGCTGACAAGGATGCTGCTCTTCTTTTATCTTATTCAATCATAATGCTCAATACAGATCAGCACAATGTTCAGGTGAAGAAGAAGATGACAGAGGAGGATTTCATTCGAAATAATCGGCACATCAATGGAGGCGAGGATCTTCCCCGAGAGTTCCTGTCAGAGCTTTACCACTCAATATGCAAGAATGAGATCCGCACTACTCCAGAACAAGGTGCTGGTTTTCCTGAAATGACTCCAAGCAGATGGATTGATTTGATGCACAAATCCAAGAAGAATGCTCCATTTATTGTATCTGATTCCAGAGCCTACCTTGATCAGGATATGTTCTCTATAGTGTCTGGGCCTACAATTGCTGCTATATCTGTGGTATTTGATAATGCTGAACAGGAAGAGGTTTACCAAACATGTCTCGATGGCTTTTTAGCTGTTGCCAAGATTTCAGCATGCTATCATCTTGAAGATGTTCTGGATGATCTGGTTGTGTCTCTCTGTAAGTTCACAACCCTCTTAAATTCATCATTTCATGACGAACCTGAACTAGAATTTGGTGATGATATAAAAGCGAGAATGTCAACTGTGACAGTTTTCACAATTGCCAATCGGTATGGTGATTACATTCGTACAGGATGGAGAAATATTATTGACTGTATATTAAGATTACACAAGCTTGGTCTTCTTCCGGCTCGTGTGGCTCAAGATGCAGCTGATGAGTCGGAGTTTCCCTCTGAGACAGATCATGGAAAACCTATCACAAATTCCCAATCTAAAATTCATACGCCTTCCGTTAGTACTCCTAAGAAATCCTCTGGATTCATGGGTCGGTTTAGTCAGCTCTTATCTCTTGATACAGAGGAGCCGAAACCACAGCCTTCTGAAGAAGAACTTGCTACTCGTCAGCGCACTGTACAGACAGTTGAAGAGTGCCACATTGACAGCATATTTACCGAAAGCAAGTTTTTGCAGGCCGAATCCCTCTTACAGCTTTCACAAGCACTGATCTGGGCTGCAGGGCGACTTCAGAAAGGGAATAACTCTGCTGAGGATGAAGATACTGTTGTCTTTTGCTTGGAGTTGCTGATTGCTATTACCCTGAATAATAGGGATAGGATTTTGCTTCTTTGGCAGGGTGTGTATGAGTTCATATCCAACATTGTGCAGTCAACTGTCATGCCTTGTGCCTTGGTAGAAAAGGCTGTCTTTGGACTTCTTCGGATTTGTCAGCGGCTGCTTCCCTATAAGGAAAACCTTGCTGATGATCTTTTGAGGTCACTGCAGCTTGTCTTGAAGCTTGATGCTCGGGTTGCCGATGCATACTGTGAGCAAATTACACAGGAAGTCAGTAGGCTTGTAAAGGCAAATGCCTCTCACATCAGATCTCAATTGGGGTGGCGCACAATTACGTCCCTACTCTCAATCACTGCTCGGCACCCGGATGCTTCTGAGGCTGGTTTTGACGCACTGTTCTTCATTATGTCAGGTGGAACTCACTTGTTGCCAGCAAATTATGTTCTCTGTGTCGATGCGTCACGGCAGTTTGCTGAGTCTCGTGTTGGGCAGGCAGATCGGTCTGTCTGTGCACTGGATCTTATGGCAGGTTCTGTTGATTGTTTAGCAAGATGGGCCCGTGAGGCTAAGCTATCTATGAATGAGGAGGATTCTGTGAAAATGTCTCAGGATATTGGGGAAATGTGGTTGAGGCTTGTTCAGGGATTGAGAAAAGTTTGTTTAGACCAAAGAGAAGTGGTTAGGAACCATGCTTTGTCGTTGTTACGGAACTGCTTGACAGGAGTTGATGGGATCCCTCTTCCATATGGTCTGTGGTTGCAGTGCTTTGATCTTGTGATTTTCACAGTGCTTGATGATTTGCTTGAAATTGCACAGGTTCACTCCCAAAAGGAGTACCGCAACATGGAAGGCACTCTTATCCTGGCCATGAAGCTCTTGTCCAAAGTGTTTTTGCAGCTACTTCCTGACCTATCACATTTAACAACCTTCTGTAAACTATGGCTGGGTGTTATTAGTCGAATGGAAAACTATATGAAGGTGAAAGTTGGAGGGAGGAAAAGTGAGAAGCTTCAGGACGAAGTACCTGAGCTACTTAAGAACACCTTGCTTGTAATGAATTTAAGGGGAGTGCTTGTTCAAAAGAGTGGTTCAGGTGAGGATGGCTTGTGGGAGCAGACATGGCTACATGTAAATAGAATTGCTCCATCTTTGCAAGCTGAGGTGCTTGCTCAAATTCTAGTGCAGTCACATACTGAGCAGGGTGAAACAGGAGTATCTGCTGAAAAGGGTTCTTCAACTGAAACAATACCCTCTGGAGGTTCTGGCTGTGGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

1465

Amino Acids

163.88

Weight (kDa)

5.38

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec7-like_HUS	PF12783	320 - 480	4.3e-40	Mon2/Sec7/BIG1-like, HUS domain
Sec7	PF01369	566 - 749	1e-71	Sec7 domain
TPR_28	PF23325	1249 - 1428	1.1e-11	GBF1-like, tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	221, 1250
Acc36I	ACCTGC	2 cut(s)	541, 3638
Acc65I	GGTACC	1 cut(s)	1910
AccB1I	GGYRCC	3 cut(s)	1715, 1910, 3480
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccI	GTMKAC	3 cut(s)	772, 1613, 1823
AciI	CCGC	6 cut(s)	128, 685, 1951, 2248, 3277, 3958
AclI	AACGTT	2 cut(s)	396, 999
AcoI	YGGCCR	2 cut(s)	1347, 3984
AcuI	CTGAAG	4 cut(s)	723, 2949, 3056, 4115
AcyI	GRCGYC	1 cut(s)	7
AfiI	CCNNNNNNNGG	8 cut(s)	329, 448, 1745, 1960, 2264, 2371, 3964, 4376
AflII	CTTAAG	1 cut(s)	4154
AflIII	ACRYGT	3 cut(s)	572, 2459, 4246
AjnI	CCWGG	4 cut(s)	850, 1077, 1978, 3981
AjuI	GAANNNNNNNTTGG	4 cut(s)	2583, 2615, 2808, 2840
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	4179, 4211
Alw21I	GWGCWC	2 cut(s)	322, 3634
Alw26I	GTCTC	6 cut(s)	728, 2468, 2544, 2777, 3603, 3729
Alw44I	GTGCAC	2 cut(s)	318, 3630
AlwNI	CAGNNNCTG	2 cut(s)	3280, 3653
Ama87I	CYCGRG	2 cut(s)	2199, 3351
AoxI	GGCC	7 cut(s)	1180, 1347, 1525, 2396, 3018, 3675, 3984
ApaI	GGGCCC	1 cut(s)	3679
ApaLI	GTGCAC	2 cut(s)	318, 3630
Asp700I	GAANNNNTTC	6 cut(s)	70, 718, 972, 1158, 1385, 2517
Asp718I	GGTACC	1 cut(s)	1910
AspLEI	GCGC	5 cut(s)	222, 747, 1251, 2955, 3447
AspS9I	GGNCC	5 cut(s)	1022, 1107, 2396, 3675, 3676
AsuC2I	CCSGG	2 cut(s)	889, 3485
AsuII	TTCGAA	1 cut(s)	2161
AvaI	CYCGRG	2 cut(s)	2199, 3351
AvaII	GGWCC	2 cut(s)	1022, 1107
BaeGI	GKGCMC	3 cut(s)	322, 3634, 3679
BaeI	ACNNNNGTAYC	4 cut(s)	3096, 3129, 4317, 4350
BalI	TGGCCA	2 cut(s)	1349, 3986
BamHI	GGATCC	1 cut(s)	3852
BanI	GGYRCC	3 cut(s)	1715, 1910, 3480
BanII	GRGCYC	2 cut(s)	1196, 3679
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BauI	CACGAG	2 cut(s)	2739, 3600
BbsI	GAAGAC	2 cut(s)	1491, 2720
Bbv12I	GWGCWC	2 cut(s)	322, 3634
BbvCI	CCTCAGC	2 cut(s)	3093, 4278
BceAI	ACGGC	2 cut(s)	1842, 3599
BcgI	CGANNNNNNTGC	4 cut(s)	299, 333, 3599, 3633
BciT130I	CCWGG	4 cut(s)	852, 1079, 1980, 3983
BciVI	GTATCC	1 cut(s)	1933
BclI	TGATCA	3 cut(s)	178, 379, 2368
BcnI	CCSGG	2 cut(s)	889, 3485
BcoDI	GTCTC	6 cut(s)	728, 2468, 2544, 2777, 3603, 3729
BfaI	CTAG	4 cut(s)	1361, 2054, 2594, 4298
BfmI	CTRYAG	9 cut(s)	494, 561, 1092, 1265, 1372, 1645, 2385, 3060, 3326
BfrI	CTTAAG	1 cut(s)	4154
BfuAI	ACCTGC	2 cut(s)	541, 3638
BfuI	GTATCC	1 cut(s)	1933
BglI	GCCNNNNNGGC	1 cut(s)	3683
BglII	AGATCT	2 cut(s)	302, 3428
BlpI	GCTNAGC	1 cut(s)	3687
BmcAI	AGTACT	1 cut(s)	2845
Bme1390I	CCNGG	6 cut(s)	852, 889, 1079, 1980, 3485, 3983
Bme18I	GGWCC	2 cut(s)	1022, 1107
BmeT110I	CYCGRG	2 cut(s)	2199, 3351
BmgT120I	GGNCC	5 cut(s)	1022, 1107, 2396, 3675, 3676
BmrFI	CCNGG	6 cut(s)	852, 889, 1079, 1980, 3485, 3983
BmrI	ACTGGG	1 cut(s)	1475
BmuI	ACTGGG	1 cut(s)	1475
BpiI	GAAGAC	2 cut(s)	1491, 2720
BplI	GAGNNNNNCTC	2 cut(s)	2762, 2794
BpmI	CTGGAG	3 cut(s)	1578, 2241, 4395
Bpu10I	CCTNAGC	3 cut(s)	3093, 4146, 4278
Bpu1102I	GCTNAGC	1 cut(s)	3687
Bpu14I	TTCGAA	1 cut(s)	2161
BpuEI	CTTGAG	5 cut(s)	263, 785, 1292, 1625, 2733
BpuMI	CCSGG	2 cut(s)	889, 3485
BsaBI	GATNNNNATC	2 cut(s)	177, 1656
BsaHI	GRCGYC	1 cut(s)	7
BsaJI	CCNNGG	6 cut(s)	51, 888, 1077, 1350, 1762, 3234
BsaXI	ACNNNNNCTCC	4 cut(s)	4105, 4135, 4179, 4209
Bsc4I	CCNNNNNNNGG	8 cut(s)	329, 448, 1745, 1960, 2264, 2371, 3964, 4376
Bse1I	ACTGG	9 cut(s)	202, 319, 334, 372, 439, 1481, 1595, 1717, 3639
Bse3DI	GCAATG	1 cut(s)	1554
Bse8I	GATNNNNATC	2 cut(s)	177, 1656
BseBI	CCWGG	4 cut(s)	852, 1079, 1980, 3983
BseDI	CCNNGG	6 cut(s)	51, 888, 1077, 1350, 1762, 3234
BseJI	GATNNNNATC	2 cut(s)	177, 1656
BseLI	CCNNNNNNNGG	8 cut(s)	329, 448, 1745, 1960, 2264, 2371, 3964, 4376
BseMI	GCAATG	1 cut(s)	1554
BseNI	ACTGG	9 cut(s)	202, 319, 334, 372, 439, 1481, 1595, 1717, 3639
BseRI	GAGGAG	5 cut(s)	151, 1622, 2162, 2921, 3719
BseSI	GKGCMC	3 cut(s)	322, 3634, 3679
BseYI	CCCAGC	3 cut(s)	956, 1829, 4063
BsgI	GTGCAG	3 cut(s)	1929, 3230, 4322
BshFI	GGCC	7 cut(s)	1182, 1349, 1527, 2398, 3020, 3677, 3986
BshNI	GGYRCC	3 cut(s)	1715, 1910, 3480
BsiHKAI	GWGCWC	2 cut(s)	322, 3634
BsiHKCI	CYCGRG	2 cut(s)	2199, 3351
BsiSI	CCGG	3 cut(s)	888, 2735, 3485
BslFI	GGGAC	2 cut(s)	171, 3442
BslI	CCNNNNNNNGG	8 cut(s)	329, 448, 1745, 1960, 2264, 2371, 3964, 4376
BsmAI	GTCTC	6 cut(s)	728, 2468, 2544, 2777, 3603, 3729
BsmFI	GGGAC	2 cut(s)	171, 3442
BsmI	GAATGC	4 cut(s)	1475, 1884, 2015, 2335
BsnI	GGCC	7 cut(s)	1182, 1349, 1527, 2398, 3020, 3677, 3986
BsoBI	CYCGRG	2 cut(s)	2199, 3351
Bsp119I	TTCGAA	1 cut(s)	2161
Bsp120I	GGGCCC	1 cut(s)	3675
Bsp1286I	GDGCHC	4 cut(s)	322, 1196, 3634, 3679
Bsp1407I	TGTACA	2 cut(s)	351, 2959
Bsp1720I	GCTNAGC	1 cut(s)	3687
Bsp19I	CCATGG	1 cut(s)	1350
BspACI	CCGC	6 cut(s)	128, 685, 1951, 2248, 3277, 3958
BspANI	GGCC	7 cut(s)	1182, 1349, 1527, 2398, 3020, 3677, 3986
BspHI	TCATGA	3 cut(s)	933, 1870, 2578
BspMAI	CTGCAG	3 cut(s)	1376, 3064, 3330
BspMI	ACCTGC	2 cut(s)	541, 3638
BspQI	GCTCTTC	2 cut(s)	1440, 2079
BspT104I	TTCGAA	1 cut(s)	2161
BspT107I	GGYRCC	3 cut(s)	1715, 1910, 3480
BspTI	CTTAAG	1 cut(s)	4154
BsrDI	GCAATG	1 cut(s)	1554
BsrGI	TGTACA	2 cut(s)	351, 2959
BsrI	ACTGG	9 cut(s)	202, 319, 334, 372, 439, 1481, 1595, 1717, 3639
BssECI	CCNNGG	6 cut(s)	51, 888, 1077, 1350, 1762, 3234
BssNAI	GTATAC	2 cut(s)	1614, 1824
BssNI	GRCGYC	1 cut(s)	7
BssSI	CACGAG	2 cut(s)	2739, 3600
BssT1I	CCWWGG	4 cut(s)	51, 1350, 1762, 3234
Bst1107I	GTATAC	2 cut(s)	1614, 1824
Bst2BI	CACGAG	2 cut(s)	2739, 3600
Bst2UI	CCWGG	4 cut(s)	852, 1079, 1980, 3983
Bst6I	CTCTTC	6 cut(s)	512, 1440, 2079, 2439, 2967, 3864
BstACI	GRCGYC	1 cut(s)	7
BstAFI	CTTAAG	1 cut(s)	4154
BstAUI	TGTACA	2 cut(s)	351, 2959
BstBI	TTCGAA	1 cut(s)	2161
BstDSI	CCRYGG	1 cut(s)	1350
BstENI	CCTNNNNNAGG	1 cut(s)	2369
BstHHI	GCGC	5 cut(s)	222, 747, 1251, 2955, 3447
BstMAI	GTCTC	6 cut(s)	728, 2468, 2544, 2777, 3603, 3729
BstNI	CCWGG	4 cut(s)	852, 1079, 1980, 3983
BstNSI	RCATGY	8 cut(s)	96, 576, 761, 845, 1812, 2463, 2502, 4250
BstSCI	CCNGG	6 cut(s)	850, 887, 1077, 1978, 3483, 3981
BstSFI	CTRYAG	9 cut(s)	494, 561, 1092, 1265, 1372, 1645, 2385, 3060, 3326
BstSLI	GKGCMC	3 cut(s)	322, 3634, 3679
BstV2I	GAAGAC	2 cut(s)	1491, 2720
BstX2I	RGATCY	7 cut(s)	302, 1571, 2191, 2244, 3428, 3637, 3852
BstXI	CCANNNNNNTGG	2 cut(s)	964, 2298
BstYI	RGATCY	7 cut(s)	302, 1571, 2191, 2244, 3428, 3637, 3852
BstZ17I	GTATAC	2 cut(s)	1614, 1824
BsuI	GTATCC	1 cut(s)	1933
BsuRI	GGCC	7 cut(s)	1182, 1349, 1527, 2398, 3020, 3677, 3986
BtgI	CCRYGG	1 cut(s)	1350
BtsI	GCAGTG	3 cut(s)	3323, 3471, 3887
BveI	ACCTGC	2 cut(s)	541, 3638
CaiI	CAGNNNCTG	2 cut(s)	3280, 3653
CciI	TCATGA	3 cut(s)	933, 1870, 2578
CfoI	GCGC	5 cut(s)	222, 747, 1251, 2955, 3447
Cfr13I	GGNCC	5 cut(s)	1022, 1107, 2396, 3675, 3676
CseI	GACGC	2 cut(s)	3518, 3567
CspCI	CAANNNNNGTGG	2 cut(s)	3422, 3457
EaeI	YGGCCR	2 cut(s)	1347, 3984
Eam1104I	CTCTTC	6 cut(s)	512, 1440, 2079, 2439, 2967, 3864
EarI	CTCTTC	6 cut(s)	512, 1440, 2079, 2439, 2967, 3864
EciI	GGCGGA	1 cut(s)	1940
Eco130I	CCWWGG	4 cut(s)	51, 1350, 1762, 3234
Eco24I	GRGCYC	2 cut(s)	1196, 3679
Eco32I	GATATC	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	1022, 1107
Eco57I	CTGAAG	4 cut(s)	723, 2949, 3056, 4115
Eco88I	CYCGRG	2 cut(s)	2199, 3351
EcoNI	CCTNNNNNAGG	1 cut(s)	2369
EcoO109I	RGGNCCY	2 cut(s)	1022, 1107
EcoRI	GAATTC	2 cut(s)	1754, 1767
EcoRII	CCWGG	4 cut(s)	850, 1077, 1978, 3981
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	4 cut(s)	51, 1350, 1762, 3234
EcoT22I	ATGCAT	5 cut(s)	98, 169, 645, 703, 3367
EcoT38I	GRGCYC	2 cut(s)	1196, 3679
ErhI	CCWWGG	4 cut(s)	51, 1350, 1762, 3234
FaqI	GGGAC	2 cut(s)	171, 3442
FauNDI	CATATG	1 cut(s)	3865
FbaI	TGATCA	3 cut(s)	178, 379, 2368
FblI	GTMKAC	3 cut(s)	772, 1613, 1823
FriOI	GRGCYC	2 cut(s)	1196, 3679
FspBI	CTAG	4 cut(s)	1361, 2054, 2594, 4298
FspI	TGCGCA	2 cut(s)	221, 1250
GlaI	GCGC	5 cut(s)	221, 746, 1250, 2954, 3446
GsaI	CCCAGC	3 cut(s)	960, 1833, 4067
GsuI	CTGGAG	3 cut(s)	1578, 2241, 4395
HaeIII	GGCC	7 cut(s)	1182, 1349, 1527, 2398, 3020, 3677, 3986
HapII	CCGG	3 cut(s)	888, 2735, 3485
HgaI	GACGC	2 cut(s)	3518, 3567
HhaI	GCGC	5 cut(s)	222, 747, 1251, 2955, 3447
Hin1I	GRCGYC	1 cut(s)	7
Hin6I	GCGC	5 cut(s)	220, 745, 1249, 2953, 3445
HinP1I	GCGC	5 cut(s)	220, 745, 1249, 2953, 3445
HincII	GTYRAC	5 cut(s)	394, 815, 1188, 2628, 3216
HindII	GTYRAC	5 cut(s)	394, 815, 1188, 2628, 3216
HindIII	AAGCTT	3 cut(s)	2720, 3341, 4127
HpaII	CCGG	3 cut(s)	888, 2735, 3485
HpyAV	CCTTC	8 cut(s)	205, 683, 1695, 2844, 2934, 3962, 4057, 4090
HpyCH4IV	ACGT	3 cut(s)	396, 999, 3455
HpySE526I	ACGT	3 cut(s)	396, 999, 3455
Hsp92I	GRCGYC	1 cut(s)	7
HspAI	GCGC	5 cut(s)	220, 745, 1249, 2953, 3445
KpnI	GGTACC	1 cut(s)	1914
Ksp22I	TGATCA	3 cut(s)	178, 379, 2368
LguI	GCTCTTC	2 cut(s)	1440, 2079
LmnI	GCTCC	5 cut(s)	1322, 2338, 2908, 4231, 4267
MaeI	CTAG	4 cut(s)	1361, 2054, 2594, 4298
MaeII	ACGT	3 cut(s)	396, 999, 3455
MaeIII	GTNAC	9 cut(s)	451, 1418, 1597, 1637, 2632, 3321, 3579, 3822, 4305
MfeI	CAATTG	4 cut(s)	776, 2403, 2646, 3434
MflI	RGATCY	7 cut(s)	302, 1571, 2191, 2244, 3428, 3637, 3852
MhlI	GDGCHC	4 cut(s)	322, 1196, 3634, 3679
MlsI	TGGCCA	2 cut(s)	1349, 3986
MluNI	TGGCCA	2 cut(s)	1349, 3986
MlyI	GAGTC	5 cut(s)	50, 1594, 2281, 2774, 3605
MmeI	TCCRAC	4 cut(s)	99, 2748, 3225, 4087
Mox20I	TGGCCA	2 cut(s)	1349, 3986
Mph1103I	ATGCAT	5 cut(s)	98, 169, 645, 703, 3367
MroXI	GAANNNNTTC	6 cut(s)	70, 718, 972, 1158, 1385, 2517
MscI	TGGCCA	2 cut(s)	1349, 3986
MslI	CAYNNNNRTG	3 cut(s)	563, 2178, 3486
Msp20I	TGGCCA	2 cut(s)	1349, 3986
MspA1I	CMGCKG	3 cut(s)	269, 2759, 3277
MspCI	CTTAAG	1 cut(s)	4154
MspI	CCGG	3 cut(s)	888, 2735, 3485
MspR9I	CCNGG	6 cut(s)	852, 889, 1079, 1980, 3485, 3983
MunI	CAATTG	4 cut(s)	776, 2403, 2646, 3434
Mva1269I	GAATGC	4 cut(s)	1475, 1884, 2015, 2335
MvaI	CCWGG	4 cut(s)	852, 1079, 1980, 3983
NciI	CCSGG	2 cut(s)	889, 3485
NcoI	CCATGG	1 cut(s)	1350
NdeI	CATATG	1 cut(s)	3865
NmeAIII	GCCGAG	1 cut(s)	3457
NmuCI	GTSAC	8 cut(s)	451, 1418, 1597, 1637, 2632, 3321, 3579, 4305
NsbI	TGCGCA	2 cut(s)	221, 1250
NsiI	ATGCAT	5 cut(s)	98, 169, 645, 703, 3367
NspI	RCATGY	8 cut(s)	96, 576, 761, 845, 1812, 2463, 2502, 4250
NspV	TTCGAA	1 cut(s)	2161
OliI	CACNNNNGTG	1 cut(s)	563
PaeI	GCATGC	5 cut(s)	96, 761, 845, 1812, 2502
PagI	TCATGA	3 cut(s)	933, 1870, 2578
PciI	ACATGT	3 cut(s)	572, 2459, 4246
PciSI	GCTCTTC	2 cut(s)	1440, 2079
PctI	GAATGC	4 cut(s)	1475, 1884, 2015, 2335
PdmI	GAANNNNTTC	6 cut(s)	70, 718, 972, 1158, 1385, 2517
PfeI	GAWTC	8 cut(s)	863, 928, 1843, 1985, 2351, 2865, 3023, 3710
PflMI	CCANNNNNTGG	1 cut(s)	329
PleI	GAGTC	5 cut(s)	50, 1594, 2281, 2773, 3604
PpsI	GAGTC	5 cut(s)	50, 1594, 2281, 2773, 3604
PpuMI	RGGWCCY	2 cut(s)	1022, 1107
PscI	ACATGT	3 cut(s)	572, 2459, 4246
Psp1406I	AACGTT	2 cut(s)	396, 999
Psp5II	RGGWCCY	2 cut(s)	1022, 1107
Psp6I	CCWGG	4 cut(s)	850, 1077, 1978, 3981
PspFI	CCCAGC	3 cut(s)	956, 1829, 4063
PspGI	CCWGG	4 cut(s)	850, 1077, 1978, 3981
PspOMI	GGGCCC	1 cut(s)	3675
PspPI	GGNCC	5 cut(s)	1022, 1107, 2396, 3675, 3676
PspPPI	RGGWCCY	2 cut(s)	1022, 1107
PsrI	GAACNNNNNNTAC	2 cut(s)	1248, 1280
PstI	CTGCAG	3 cut(s)	1376, 3064, 3330
PstNI	CAGNNNCTG	2 cut(s)	3280, 3653
PsuI	RGATCY	7 cut(s)	302, 1571, 2191, 2244, 3428, 3637, 3852
PvuII	CAGCTG	2 cut(s)	269, 2759
RseI	CAYNNNNRTG	3 cut(s)	563, 2178, 3486
SapI	GCTCTTC	2 cut(s)	1440, 2079
Sau96I	GGNCC	5 cut(s)	1022, 1107, 2396, 3675, 3676
ScaI	AGTACT	1 cut(s)	2845
SchI	GAGTC	5 cut(s)	50, 1594, 2281, 2774, 3605
ScrFI	CCNGG	6 cut(s)	852, 889, 1079, 1980, 3485, 3983
SduI	GDGCHC	4 cut(s)	322, 1196, 3634, 3679
SfcI	CTRYAG	9 cut(s)	494, 561, 1092, 1265, 1372, 1645, 2385, 3060, 3326
SfuI	TTCGAA	1 cut(s)	2161
SinI	GGWCC	2 cut(s)	1022, 1107
SmiMI	CAYNNNNRTG	3 cut(s)	563, 2178, 3486
SmlI	CTYRAG	6 cut(s)	278, 764, 1271, 1604, 2748, 4154
SmoI	CTYRAG	6 cut(s)	278, 764, 1271, 1604, 2748, 4154
SphI	GCATGC	5 cut(s)	96, 761, 845, 1812, 2502
SsiI	CCGC	6 cut(s)	128, 685, 1951, 2248, 3277, 3958
SspI	AATATT	1 cut(s)	2692
SspMI	CTAG	4 cut(s)	1361, 2054, 2594, 4298
StyD4I	CCNGG	6 cut(s)	850, 887, 1077, 1978, 3483, 3981
StyI	CCWWGG	4 cut(s)	51, 1350, 1762, 3234
TaiI	ACGT	3 cut(s)	399, 1002, 3458
TaqI	TCGA	4 cut(s)	2161, 2466, 3573, 4078
TaqII	GACCGA	1 cut(s)	3609
TatI	WGTACW	4 cut(s)	351, 1689, 2843, 2959
TauI	GCSGC	1 cut(s)	3280
TfiI	GAWTC	8 cut(s)	863, 928, 1843, 1985, 2351, 2865, 3023, 3710
TseFI	GTSAC	8 cut(s)	451, 1418, 1597, 1637, 2632, 3321, 3579, 4305
Tsp45I	GTSAC	8 cut(s)	451, 1418, 1597, 1637, 2632, 3321, 3579, 4305
TspGWI	ACGGA	4 cut(s)	569, 637, 2827, 3841
Van91I	CCANNNNNTGG	1 cut(s)	329
Vha464I	CTTAAG	1 cut(s)	4154
VneI	GTGCAC	2 cut(s)	318, 3630
VpaK11BI	GGWCC	2 cut(s)	1022, 1107
XagI	CCTNNNNNAGG	1 cut(s)	2369
XceI	RCATGY	8 cut(s)	96, 576, 761, 845, 1812, 2463, 2502, 4250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3870
XmiI	GTMKAC	3 cut(s)	772, 1613, 1823
XmnI	GAANNNNTTC	6 cut(s)	70, 718, 972, 1158, 1385, 2517
XspI	CTAG	4 cut(s)	1361, 2054, 2594, 4298
ZrmI	AGTACT	1 cut(s)	2845
Zsp2I	ATGCAT	5 cut(s)	98, 169, 645, 703, 3367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.