Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

27373431 .. 27375014

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G268300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

CTTATATTCACCATTCTAATCACGACATTATTAATTCTTCTCACCGCCACCATAGCCATGGCAAATTATAATACACAGCTACCAGCCGACCACTCCCAAGTCAACACATGGTTCAATAACAACGTGAAGCCGTACACGGCAAGGAATGGCACACTTGACTCTACCCTTGCAATGGCTGAGGCTAGTCAAAAGGTTATCAAGGTCAATAAGGACGGAAGAGGACAATTCAAGACCATCGCTGACGCCGTTAATAGCAATCCAGTCGGCAACACCAAACGTGTTATTGTATACATTGGAGGAGTGTACAATGAGAAAATCACAATTCCACAAAATAAACCATTTGTTACATTTTATGGCTCTCCAACAACTATGTCAACTTTGACCTTTGCTGGCACAGCCCAAAAGTATGGAACTGTGGATAGTACCACAGTGATTGCCGAATCTGACTACTTCGTGGCAGCTATAACCTTATTATTAAGGTACAACTCTTCGCCAAGGCCAGATGGGAAAAGAGTGGGAGAACAGGCGTTGGCATTGAGGGTGTCGAGTAATAAGTCAGCCTTGTTCAATTGCAGGTTGATTGGTTTCCAGGACACACTTTGTGATGACAGGGGCAATCATTTTTTCAAAGACTGCTTTATTGAAGGCACTTTACATGTGCTGGGGAATAATGAAATGACAGTGATAACAGCACAAGCAAGGGACTCAACTTCAGAGGATACTGGAGATTCATTTGTCCACTGCAACATAACTGAGATTGGAAATGGCACATATTTGGGCAAGGTTTGGAGGACCAGTCCCAGAGTGGTCTTTGCCTACACCAGCATCACCGTGTTCTATGGAGAATACAAGTGTTCGAGTCCAGGTTCAAGTATGGTTGAGAGAGTAAAATATGCCAAACAACTGACTGGGGAACAAATCAAACCTTTCCTCAGCCTTGACTATATTCAAGGTTCTAAATGGCTGCTTCCTCCTCCAAATCCAAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

331

Amino Acids

36.35

Weight (kDa)

8.95

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	4 cut(s)	134, 305, 424, 482
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	2 cut(s)	277, 655
AgsI	TTSAA	7 cut(s)	115, 229, 568, 628, 644, 870, 950
AjnI	CCWGG	2 cut(s)	588, 862
AluBI	AGCT	2 cut(s)	79, 461
AluI	AGCT	2 cut(s)	79, 461
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	458, 964
AseI	ATTAAT	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	2 cut(s)	34, 820
AvaII	GGWCC	1 cut(s)	792
BarI	GAAGNNNNNNTAC	2 cut(s)	636, 668
BbvCI	CCTCAGC	2 cut(s)	177, 932
BbvI	GCAGC	2 cut(s)	470, 951
BccI	CCATC	2 cut(s)	242, 497
BceAI	ACGGC	3 cut(s)	115, 153, 230
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	2 cut(s)	590, 864
BciVI	GTATCC	1 cut(s)	712
BfaI	CTAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	564
BfuI	GTATCC	1 cut(s)	712
BisI	GCNGC	2 cut(s)	459, 965
BlsI	GCNGC	2 cut(s)	460, 966
Bme1390I	CCNGG	2 cut(s)	590, 864
Bme18I	GGWCC	1 cut(s)	792
BmgT120I	GGNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	590, 864
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	1 cut(s)	834
BmuI	ACTGGG	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	744
Bpu10I	CCTNAGC	2 cut(s)	177, 932
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	57, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	4 cut(s)	260, 727, 795, 913
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	590, 864
BseDI	CCNNGG	2 cut(s)	57, 494
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	168, 744, 946
BseNI	ACTGG	4 cut(s)	260, 727, 795, 913
BseRI	GAGGAG	2 cut(s)	312, 963
BseXI	GCAGC	2 cut(s)	470, 951
BseYI	CCCAGC	1 cut(s)	661
BshFI	GGCC	1 cut(s)	499
BslFI	GGGAC	2 cut(s)	716, 783
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	716, 783
BsnI	GGCC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	3 cut(s)	169, 745, 945
BspMI	ACCTGC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	4 cut(s)	260, 727, 795, 913
BssECI	CCNNGG	2 cut(s)	57, 494
BssNAI	GTATAC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	57, 494
Bst1107I	GTATAC	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	590, 864
Bst4CI	ACNGT	4 cut(s)	415, 430, 682, 832
Bst6I	CTCTTC	2 cut(s)	211, 493
BstACI	GRCGYC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	3 cut(s)	177, 753, 932
BstDSI	CCRYGG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 395
BstNI	CCWGG	2 cut(s)	590, 864
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	588, 862
BstV1I	GCAGC	2 cut(s)	470, 951
BstXI	CCANNNNNNTGG	2 cut(s)	58, 407
BstZ17I	GTATAC	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	499
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	3 cut(s)	435, 687, 739
BveI	ACCTGC	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	792
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	4 cut(s)	133, 304, 423, 481
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	3 cut(s)	58, 108, 656
CviQI	GTAC	4 cut(s)	133, 304, 423, 481
DdeI	CTNAG	3 cut(s)	177, 753, 932
DraIII	CACNNNGTG	1 cut(s)	602
Eam1104I	CTCTTC	2 cut(s)	211, 493
EarI	CTCTTC	2 cut(s)	211, 493
Eco130I	CCWWGG	2 cut(s)	57, 494
Eco47I	GGWCC	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	696
EcoRII	CCWGG	2 cut(s)	588, 862
EcoT14I	CCWWGG	2 cut(s)	57, 494
ErhI	CCWWGG	2 cut(s)	57, 494
FaeI	CATG	3 cut(s)	61, 111, 659
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	2 cut(s)	716, 783
FatI	CATG	3 cut(s)	57, 107, 655
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	459, 965
Fsp4HI	GCNGC	2 cut(s)	459, 965
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	459, 965
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	1 cut(s)	499
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	61, 111, 659
HincII	GTYRAC	2 cut(s)	103, 375
HindII	GTYRAC	2 cut(s)	103, 375
HinfI	GANTC	5 cut(s)	158, 440, 704, 728, 859
HphI	GGTGA	2 cut(s)	34, 820
Hpy166II	GTNNAC	6 cut(s)	103, 135, 289, 304, 375, 739
Hpy188I	TCNGA	2 cut(s)	445, 715
Hpy188III	TCNNGA	2 cut(s)	22, 229
Hpy8I	GTNNAC	6 cut(s)	103, 135, 289, 304, 375, 739
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	4 cut(s)	415, 430, 682, 832
HpyCH4IV	ACGT	2 cut(s)	123, 277
HpyCH4V	TGCA	3 cut(s)	170, 573, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 395
HpyF3I	CTNAG	3 cut(s)	177, 753, 932
HpySE526I	ACGT	2 cut(s)	123, 277
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	61, 111, 659
Lsp1109I	GCAGC	2 cut(s)	470, 951
LweI	GCATC	1 cut(s)	834
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	123, 277
MaeIII	GTNAC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	29, 228, 480
MfeI	CAATTG	1 cut(s)	568
MluCI	AATT	5 cut(s)	33, 64, 224, 321, 568
MlyI	GAGTC	3 cut(s)	152, 698, 868
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	9 cut(s)	172, 212, 290, 531, 709, 783, 941, 981, 984
MseI	TTAA	3 cut(s)	32, 249, 476
MslI	CAYNNNNRTG	2 cut(s)	56, 830
MspR9I	CCNGG	2 cut(s)	590, 864
MunI	CAATTG	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	590, 864
MwoI	GCNNNNNNNGC	2 cut(s)	53, 395
NcoI	CCATGG	1 cut(s)	57
NlaIII	CATG	3 cut(s)	61, 111, 659
NspI	RCATGY	1 cut(s)	659
PciI	ACATGT	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	440, 728
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	460, 966
PleI	GAGTC	3 cut(s)	152, 698, 867
PpsI	GAGTC	3 cut(s)	152, 698, 867
PscI	ACATGT	1 cut(s)	655
PshBI	ATTAAT	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	588, 862
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	2 cut(s)	588, 862
PspPI	GGNCC	1 cut(s)	792
RsaI	GTAC	4 cut(s)	134, 305, 424, 482
RsaNI	GTAC	4 cut(s)	133, 304, 423, 481
RseI	CAYNNNNRTG	2 cut(s)	56, 830
SaqAI	TTAA	3 cut(s)	32, 249, 476
SatI	GCNGC	2 cut(s)	459, 965
Sau96I	GGNCC	1 cut(s)	792
SchI	GAGTC	3 cut(s)	152, 698, 868
ScrFI	CCNGG	2 cut(s)	590, 864
SfaNI	GCATC	1 cut(s)	834
SinI	GGWCC	1 cut(s)	792
SmiMI	CAYNNNNRTG	2 cut(s)	56, 830
Sse9I	AATT	5 cut(s)	33, 64, 224, 321, 568
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	588, 862
StyI	CCWWGG	2 cut(s)	57, 494
TaaI	ACNGT	4 cut(s)	415, 430, 682, 832
TaiI	ACGT	2 cut(s)	126, 280
TaqI	TCGA	2 cut(s)	545, 857
TasI	AATT	5 cut(s)	33, 64, 224, 321, 568
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	440, 728
Tru1I	TTAA	3 cut(s)	32, 249, 476
Tru9I	TTAA	3 cut(s)	32, 249, 476
TscAI	CASTG	3 cut(s)	435, 687, 746
TseI	GCWGC	2 cut(s)	458, 964
TspDTI	ATGAA	2 cut(s)	687, 720
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	435, 687, 746
VpaK11BI	GGWCC	1 cut(s)	792
VspI	ATTAAT	1 cut(s)	32
XceI	RCATGY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 802
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.