Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342511.1

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

120 .. 843

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342511.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgtatggatttcaggacaccatttgtgatgataaaggctatcatttcttcaaggactgctacgttgaaggaactgtagatttcatcttcggaagtggaaaatctctctatttgagcacacatttacatgttttaggggacaccggaatgactgtgataaccgcacaggcaagggacagtaaagaggacaccggatactcatttgttcactgcaatataacggggaccgccaagggcacatttttgggcagagcttggagggctagtccccaggtggtgtatgcctacaccgccatgggagaagttgtcagtccagaaggatggaccgacaatcgccaccccgaatacgacaactctgtgaattttggagagtacaagtgtattggtccaggttcaagcatgagtaagagagtgaaattcacaaaagagctgagcgaggcagatgccaaaccttacatcagcctgagctttattgagggttccaagtggttgcttcctcctccaaatccgaaggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

172

Amino Acids

19.11

Weight (kDa)

5.93

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	162, 228, 291
AcsI	RAATTY	2 cut(s)	361, 416
AfaI	GTAC	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	52, 68, 396
AjnI	CCWGG	2 cut(s)	270, 388
AluBI	AGCT	3 cut(s)	254, 430, 468
AluI	AGCT	3 cut(s)	254, 430, 468
Alw21I	GWGCWC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	361, 416
AspS9I	GGNCC	3 cut(s)	225, 324, 386
AvaII	GGWCC	3 cut(s)	225, 324, 386
BaeGI	GKGCMC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	1 cut(s)	315
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	2 cut(s)	272, 390
BciVI	GTATCC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	272, 390
Bme18I	GGWCC	3 cut(s)	225, 324, 386
BmgT120I	GGNCC	3 cut(s)	225, 324, 386
BmiI	GGNNCC	2 cut(s)	226, 481
BmrFI	CCNGG	2 cut(s)	272, 390
BmsI	GCATC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	464
Bpu1102I	GCTNAGC	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	231, 270, 294
BsaWI	WCCGGW	2 cut(s)	143, 191
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 291, 321
BseBI	CCWGG	2 cut(s)	272, 390
BseDI	CCNNGG	3 cut(s)	231, 270, 294
BseGI	GGATG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	422, 455
BseRI	GAGGAG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	144, 192
BslFI	GGGAC	4 cut(s)	152, 188, 238, 252
BsmFI	GGGAC	4 cut(s)	152, 188, 238, 252
Bsp1286I	GDGCHC	2 cut(s)	119, 239
Bsp1720I	GCTNAGC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	3 cut(s)	162, 228, 291
BspCNI	CTCAG	2 cut(s)	423, 456
BspLI	GGNNCC	2 cut(s)	226, 481
BssECI	CCNNGG	3 cut(s)	231, 270, 294
BssT1I	CCWWGG	2 cut(s)	231, 294
Bst2UI	CCWGG	2 cut(s)	272, 390
Bst4CI	ACNGT	3 cut(s)	76, 154, 179
BstDEI	CTNAG	2 cut(s)	431, 464
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 290
BstNI	CCWGG	2 cut(s)	272, 390
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	270, 388
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	225, 324, 386
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	3 cut(s)	128, 295, 400
CviJI	RGCY	6 cut(s)	39, 254, 263, 430, 462, 468
CviKI_1	RGCY	6 cut(s)	39, 254, 263, 430, 462, 468
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	431, 464
Eco130I	CCWWGG	2 cut(s)	231, 294
Eco47I	GGWCC	3 cut(s)	225, 324, 386
EcoRII	CCWGG	2 cut(s)	270, 388
EcoT14I	CCWWGG	2 cut(s)	231, 294
ErhI	CCWWGG	2 cut(s)	231, 294
FaeI	CATG	3 cut(s)	131, 298, 403
FaiI	YATR	6 cut(s)	6, 129, 218, 282, 296, 401
FaqI	GGGAC	4 cut(s)	152, 188, 238, 252
FatI	CATG	3 cut(s)	127, 294, 399
FokI	GGATG	1 cut(s)	333
FspBI	CTAG	1 cut(s)	264
HapII	CCGG	2 cut(s)	144, 192
Hin1II	CATG	3 cut(s)	131, 298, 403
HpaII	CCGG	2 cut(s)	144, 192
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	92, 510
Hpy188III	TCNNGA	2 cut(s)	14, 314
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	62, 311, 505
HpyCH4III	ACNGT	3 cut(s)	76, 154, 179
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 290
HpyF3I	CTNAG	2 cut(s)	431, 464
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	131, 298, 403
LpnPI	CCDG	9 cut(s)	152, 157, 205, 257, 284, 327, 375, 402, 476
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	63
MboII	GAAGA	2 cut(s)	40, 79
MhlI	GDGCHC	2 cut(s)	119, 239
MluCI	AATT	2 cut(s)	361, 416
MnlI	CCTC	6 cut(s)	178, 252, 430, 469, 507, 510
MslI	CAYNNNNRTG	3 cut(s)	126, 146, 293
MspI	CCGG	2 cut(s)	144, 192
MspR9I	CCNGG	2 cut(s)	272, 390
MvaI	CCWGG	2 cut(s)	272, 390
MwoI	GCNNNNNNNGC	2 cut(s)	260, 290
NcoI	CCATGG	1 cut(s)	294
NlaIII	CATG	3 cut(s)	131, 298, 403
NlaIV	GGNNCC	2 cut(s)	226, 481
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	270, 388
PspGI	CCWGG	2 cut(s)	270, 388
PspN4I	GGNNCC	2 cut(s)	226, 481
PspPI	GGNCC	3 cut(s)	225, 324, 386
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	3 cut(s)	126, 146, 293
Sau96I	GGNCC	3 cut(s)	225, 324, 386
ScrFI	CCNGG	2 cut(s)	272, 390
SduI	GDGCHC	2 cut(s)	119, 239
SetI	ASST	8 cut(s)	66, 256, 276, 394, 432, 454, 470, 516
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	3 cut(s)	225, 324, 386
SmiMI	CAYNNNNRTG	3 cut(s)	126, 146, 293
Sse9I	AATT	2 cut(s)	361, 416
SsiI	CCGC	3 cut(s)	162, 228, 291
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	270, 388
StyI	CCWWGG	2 cut(s)	231, 294
TaaI	ACNGT	3 cut(s)	76, 154, 179
TaiI	ACGT	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	2 cut(s)	361, 416
TatI	WGTACW	1 cut(s)	372
TscAI	CASTG	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	225, 324, 386
XapI	RAATTY	2 cut(s)	361, 416
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.