Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001024

Physical Location & Seq

Genomic Coordinates Reverse (-)

19971802 .. 19973355

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCGGAAGAAAGACATGGATGGGCATCCATGCAGCTCTGATGACGATTCTCCTTACAGCTCCGGCTGCCATGGCGGGTGGTAACACCGTCATACCAGCCGACAAATCCGGAGTCAACAAGTGGTTCAATGACATTGTGAATCAAAAGTCCGGACTTGACTCTCAGCTTACCAAGGCGGAGCAGGGTACCAAAGTTGTCAAGGTCATGCAAAATGGAGGAGGAAACTTCAAGACAATCACGGATGCCGTTAAAAGCGTTCCGAACGGGAACACTAACCGTGTGATTATATACATTGGAGGGGGCGCACAAGCAGTTGCCTTGAGGGTGTCCGGTACCAAAGCCGCATTGTACAATTGCAAAATGTACGGGTTCCAGGACACCGTTTGTGATGATAAAGGCTACCATCTCTTCAAGGACTGCTATATTGAAGGAACTGTAGATTTCATCTTCGGAAGCGGAAAGTCCATCTATTTGAACACAGATCTACGTGTGTTGGGCGACAACGGAATGACGGTGATAACGGCACAGGCAAGAGATGGTAAAACAGAGGACACCGGATACTCATTTGTACACTGCAACATTACCGGAACCGGCAAGGGCACGTTTTTGGGCAGGGCATGGAGGGCTAGCCCCCAGGTGGTGTATGCCTACACCGCCATAGGAGATGTTATTGCTCCAGAAGGATGGACCGACAATAGGCACCCCGAATACGATAGGTCTGTAAATTTTGGAGAGTACAAGAATATGGGACCAGGATCAAGCATGAGTAAGAGAGTGAAGTTCACAAAGCAGCTGAGCGATGCAGATGCCAAACCTTTCATCAGCCTCGACTTCATTCAGGGTACCAAATGGTTGCTTCCTATTCCAAATCCAAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0030312 GO:0030599 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042742 GO:0042995 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048046 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0060560 GO:0071840 GO:0071944 GO:0090406 GO:0098542 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

295

Amino Acids

31.82

Weight (kDa)

9.19

Isoelectric Point (pI)

24.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	103 - 282	6.3e-41	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69940 AT5G07410 AT5G07420 AT5G07430 AT5G61680
fragaria_vesca	FvH4_1g09290 FvH4_1g11590 FvH4_7g26440
malus_domestica	MD01G1173100.v1.1 MD01G1173200.v1.1 MD02G1100100.v1.1 MD02G1142600.v1.1 MD06G1150400.v1.1 MD07G1239900.v1.1
prunus_persica	Prupe.1G537900_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.1G538100_v2.0.a1 Prupe.2G268200_v2.0.a1 Prupe.2G268300_v2.0.a1 Prupe.2G268500_v2.0.a1 Prupe.3G147000_v2.0.a1 Prupe.3G149100_v2.0.a1 Prupe.6G128000_v2.0.a1 Prupe.6G128100_v2.0.a1 Prupe.6G128200_v2.0.a1 Prupe.6G128300_v2.0.a1 Prupe.7G011200_v2.0.a1 Prupe.7G192800_v2.0.a1 Prupe.I005000_v2.0.a1 Prupe.I005200_v2.0.a1
pyrus_communis	pycom07g21580
rosa_chinensis	RchiOBHm_Chr1g0373011 RchiOBHm_Chr1g0373031 RchiOBHm_Chr2g0095851
rosa_laevigata	RLG00000016600 RLG00000026857 RLG00000026858
rosa_multiflora	Rmu_co8342511.1_g000001 Rmu_co8345149.1_g000001 Rmu_sc0000496.1_g000005 Rmu_ssc0000425.1_g000010 Rmu_ssc0000425.1_g000011
rosa_roxburghii	Rroxscaffold_2G00146030 Rroxscaffold_4G00284530 Rroxscaffold_4G00284540
rosa_rugosa	Rorug01G0375500 Rorug02G0053300
rosa_samantha	Rh1AG383800 Rh1BG347700 Rh1BG347800 Rh1CG361100 Rh1CG361200 Rh1DG378600 Rh1DG378700 Rh2AG102400 Rh2BG103800 Rh2CG106300 Rh2DG103900
rosa_wichuraiana	Rw1G033830 Rw1G033840 Rw2G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	188, 335, 845
AccB1I	GGYRCC	4 cut(s)	188, 335, 702, 845
AccIII	TCCGGA	2 cut(s)	110, 152
AciI	CCGC	5 cut(s)	77, 179, 345, 459, 657
AclWI	GGATC	1 cut(s)	766
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	727
AfaI	GTAC	7 cut(s)	190, 337, 353, 368, 573, 740, 847
AfiI	CCNNNNNNNGG	2 cut(s)	640, 699
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	130, 232, 415, 431, 478
AjnI	CCWGG	3 cut(s)	375, 636, 754
AluBI	AGCT	4 cut(s)	38, 62, 169, 796
AluI	AGCT	4 cut(s)	38, 62, 169, 796
AlwI	GGATC	1 cut(s)	766
Aor13HI	TCCGGA	2 cut(s)	110, 152
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	35, 68, 793
ApoI	RAATTY	1 cut(s)	727
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
Asp718I	GGTACC	3 cut(s)	188, 335, 845
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	690, 752
AsuHPI	GGTGA	1 cut(s)	529
AsuNHI	GCTAGC	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	690, 752
BaeGI	GKGCMC	1 cut(s)	605
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	4 cut(s)	188, 335, 702, 845
BbvI	GCAGC	3 cut(s)	47, 55, 805
BccI	CCATC	5 cut(s)	16, 414, 476, 533, 681
BceAI	ACGGC	2 cut(s)	233, 540
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	3 cut(s)	377, 638, 756
BciVI	GTATCC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	554
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	4 cut(s)	36, 69, 345, 794
BlpI	GCTNAGC	1 cut(s)	797
BlsI	GCNGC	4 cut(s)	37, 70, 346, 795
Bme1390I	CCNGG	3 cut(s)	377, 638, 756
Bme18I	GGWCC	2 cut(s)	690, 752
BmgT120I	GGNCC	2 cut(s)	690, 752
BmiI	GGNNCC	7 cut(s)	190, 337, 374, 592, 704, 753, 847
BmrFI	CCNGG	3 cut(s)	377, 638, 756
BmsI	GCATC	4 cut(s)	36, 235, 793, 799
BmtI	GCTAGC	1 cut(s)	633
BpmI	CTGGAG	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	797
BpuEI	CTTGAG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	72, 174, 636
BsaWI	WCCGGW	5 cut(s)	110, 152, 332, 557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 699
Bse118I	RCCGGY	1 cut(s)	593
Bse8I	GATNNNNATC	1 cut(s)	26
BseAI	TCCGGA	2 cut(s)	110, 152
BseBI	CCWGG	3 cut(s)	377, 638, 756
BseDI	CCNNGG	3 cut(s)	72, 174, 636
BseGI	GGATG	4 cut(s)	27, 27, 250, 692
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	640, 699
BseMII	CTCAG	2 cut(s)	179, 788
BseRI	GAGGAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	605
BseXI	GCAGC	3 cut(s)	47, 55, 805
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	4 cut(s)	188, 335, 702, 845
BsiSI	CCGG	8 cut(s)	6, 65, 111, 153, 333, 558, 588, 594
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	2 cut(s)	640, 699
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp13I	TCCGGA	2 cut(s)	110, 152
Bsp1407I	TGTACA	2 cut(s)	351, 571
Bsp143I	GATC	2 cut(s)	484, 758
Bsp1720I	GCTNAGC	1 cut(s)	797
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	5 cut(s)	77, 179, 345, 459, 657
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	178, 789
BspEI	TCCGGA	2 cut(s)	110, 152
BspLI	GGNNCC	7 cut(s)	190, 337, 374, 592, 704, 753, 847
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	766
BspT107I	GGYRCC	4 cut(s)	188, 335, 702, 845
BsrFI	RCCGGY	1 cut(s)	593
BsrGI	TGTACA	2 cut(s)	351, 571
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	3 cut(s)	72, 174, 636
BssMI	GATC	2 cut(s)	484, 758
BssT1I	CCWWGG	2 cut(s)	72, 174
Bst2UI	CCWGG	3 cut(s)	377, 638, 756
Bst4CI	ACNGT	5 cut(s)	91, 281, 385, 439, 517
Bst6I	CTCTTC	1 cut(s)	416
BstAUI	TGTACA	2 cut(s)	351, 571
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	2 cut(s)	165, 797
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	27, 27, 250, 692
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	487, 761
BstMBI	GATC	2 cut(s)	484, 758
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 74, 626, 656
BstNI	CCWGG	3 cut(s)	377, 638, 756
BstSCI	CCNGG	3 cut(s)	375, 636, 754
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	47, 55, 805
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	816
BtsCI	GGATG	4 cut(s)	27, 27, 250, 692
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	631
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	690, 752
Csp6I	GTAC	7 cut(s)	189, 336, 352, 367, 572, 739, 846
CviAII	CATG	6 cut(s)	18, 32, 73, 208, 621, 766
CviQI	GTAC	7 cut(s)	189, 336, 352, 367, 572, 739, 846
DdeI	CTNAG	2 cut(s)	165, 797
DpnI	GATC	2 cut(s)	486, 760
DpnII	GATC	2 cut(s)	484, 758
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	72, 174
Eco47I	GGWCC	2 cut(s)	690, 752
EcoRII	CCWGG	3 cut(s)	375, 636, 754
EcoT14I	CCWWGG	2 cut(s)	72, 174
ErhI	CCWWGG	2 cut(s)	72, 174
FaeI	CATG	6 cut(s)	21, 35, 76, 211, 624, 769
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	6 cut(s)	17, 31, 72, 207, 620, 765
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	36, 69, 345, 794
FokI	GGATG	4 cut(s)	14, 34, 257, 699
Fsp4HI	GCNGC	4 cut(s)	36, 69, 345, 794
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	4 cut(s)	36, 69, 345, 794
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	8 cut(s)	6, 65, 111, 153, 333, 558, 588, 594
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	6 cut(s)	21, 35, 76, 211, 624, 769
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	49, 114, 142, 161
HpaII	CCGG	8 cut(s)	6, 65, 111, 153, 333, 558, 588, 594
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	3 cut(s)	118, 574, 786
Hpy188I	TCNGA	3 cut(s)	42, 264, 455
Hpy188III	TCNNGA	4 cut(s)	111, 153, 232, 680
Hpy8I	GTNNAC	3 cut(s)	118, 574, 786
HpyAV	CCTTC	2 cut(s)	425, 677
HpyCH4III	ACNGT	5 cut(s)	91, 281, 385, 439, 517
HpyCH4IV	ACGT	2 cut(s)	490, 605
HpyCH4V	TGCA	5 cut(s)	35, 211, 360, 579, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 74, 626, 656
HpyF3I	CTNAG	2 cut(s)	165, 797
HpySE526I	ACGT	2 cut(s)	490, 605
Hsp92II	CATG	6 cut(s)	21, 35, 76, 211, 624, 769
HspAI	GCGC	1 cut(s)	306
Kpn2I	TCCGGA	2 cut(s)	110, 152
KpnI	GGTACC	3 cut(s)	192, 339, 849
Kzo9I	GATC	2 cut(s)	484, 758
LmnI	GCTCC	3 cut(s)	67, 181, 682
Lsp1109I	GCAGC	3 cut(s)	47, 55, 805
LweI	GCATC	4 cut(s)	36, 235, 793, 799
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	2 cut(s)	490, 605
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	486, 760
MboI	GATC	2 cut(s)	484, 758
MboII	GAAGA	3 cut(s)	21, 403, 442
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	2 cut(s)	355, 727
MlyI	GAGTC	2 cut(s)	123, 155
MnlI	CCTC	7 cut(s)	212, 215, 293, 318, 544, 618, 839
MroI	TCCGGA	2 cut(s)	110, 152
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	8 cut(s)	6, 65, 111, 153, 333, 558, 588, 594
MspR9I	CCNGG	3 cut(s)	377, 638, 756
MunI	CAATTG	1 cut(s)	355
MvaI	CCWGG	3 cut(s)	377, 638, 756
MwoI	GCNNNNNNNGC	4 cut(s)	68, 74, 626, 656
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	484, 758
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	6 cut(s)	21, 35, 76, 211, 624, 769
NlaIV	GGNNCC	7 cut(s)	190, 337, 374, 592, 704, 753, 847
PfeI	GAWTC	2 cut(s)	49, 142
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	37, 70, 346, 795
PleI	GAGTC	2 cut(s)	122, 155
PpsI	GAGTC	2 cut(s)	122, 155
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	3 cut(s)	375, 636, 754
PspGI	CCWGG	3 cut(s)	375, 636, 754
PspN4I	GGNNCC	7 cut(s)	190, 337, 374, 592, 704, 753, 847
PspPI	GGNCC	2 cut(s)	690, 752
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	796
RsaI	GTAC	7 cut(s)	190, 337, 353, 368, 573, 740, 847
RsaNI	GTAC	7 cut(s)	189, 336, 352, 367, 572, 739, 846
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	4 cut(s)	36, 69, 345, 794
Sau3AI	GATC	2 cut(s)	484, 758
Sau96I	GGNCC	2 cut(s)	690, 752
SchI	GAGTC	2 cut(s)	123, 155
ScrFI	CCNGG	3 cut(s)	377, 638, 756
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	4 cut(s)	36, 235, 793, 799
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	2 cut(s)	690, 752
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	355, 727
SsiI	CCGC	5 cut(s)	77, 179, 345, 459, 657
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	375, 636, 754
StyI	CCWWGG	2 cut(s)	72, 174
TaaI	ACNGT	5 cut(s)	91, 281, 385, 439, 517
TaiI	ACGT	2 cut(s)	493, 608
TaqI	TCGA	1 cut(s)	831
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	2 cut(s)	355, 727
TatI	WGTACW	3 cut(s)	351, 571, 738
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	49, 142
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	581
TseI	GCWGC	3 cut(s)	35, 68, 793
TspDTI	ATGAA	3 cut(s)	436, 811, 826
TspGWI	ACGGA	2 cut(s)	257, 522
TspRI	CASTG	1 cut(s)	581
VpaK11BI	GGWCC	2 cut(s)	690, 752
XapI	RAATTY	1 cut(s)	727
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.