Prupe.3G147000_v2.0.a1

Pectinesterase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
16050082 .. 16051942
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G147000.1

Sequence Viewer

Length: 1116 bp
ATGGCAGGAAAAACAACATGCATGGGCGTCGATGCAGCTCTAACCATGACATTAATTCTTCTCACTGCCACCATAGCCATGGCGGATGATGATACACCGGTACCAGCCGACCAATCCCAAGTCAACACGTGGTTCAATAACAATGTGAAGCCGTACACAGAACGGCAGGGCACGCTTGACCCTGCGCTTGCAACGGCTGAGGCTGGTCAAACCGTCATCAAGGTCATGAAAGATGGAAGTGGACAATTCAAGACTATTACTGATGCCATTAACAGCATTCCGGCCGACAACACCAAACGTGTCATTGTGTACATTGGAGAGGGAGAGTACGAAGAGAAAATCACAATTCCACGGAATAAACCATTTGTTACATTTTATGGCTCTCCAACCAATATGCCAACTTTGACCTTTACTGGCACAGCCCAAAAGTATGGAACTGTGAATAGTGCTACAGTGATTGTTGAATCTGACTACTTCATGGCAGCTAATGTTATTATTAAGAACTCTTCACCAAGGCCAGATGGGAAAGCAGTGGGAGCGCAGGCAGTGGCATTGAGGGTGTCGGGGAACAAGTCAGCCTTGTACAATTGCAAGCTTATTGGTTTCCAGGACACCCTTTGTGATGATAAGGGCAATCATTTTTTCAAGGACTGCTTTATTGAAGGCACTGTGGATTTCATCTGGGGAAGTGGAAAGTCTCTCTATTTGAACAATGAGTTACATGTGGTGGGGGATAATGGATTAACAGTGATAACAGCACAAGCAAGGGACTCAGCTTCAGATGATACTGGATACTCATTTGCCCACTGCAACATAACTGGGACTGGAAATGGCACATATTTGGGCAGGGCTTGGAGGATCAGTCCCATGGTGGTCTTTGCCTACACCAGCATGTCTAAGGTCATCAACCCCGCCGGTTGGAGCAACGATAACCACCCTGAACGTGACAACACTGTGTTCTATGGAGAATACAAGTGTTCGGGTCCAGGTTCAAGTGTGGCTGGGAGAGTAAAATACATCAAACATATGACGGACGAACAAATCAAACCTTTCCTGAGCCTTGACTATATTCAGGGTTCCAAATGGCTGCTTCCTCCTCCAAATCCCAAAGTGTAG

Protein Analysis

372

Amino Acids

40.26

Weight (kDa)

5.99

Isoelectric Point (pI)

21.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 2 cut(s) 83, 912
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 762
AcvI CACGTG 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 5 cut(s) 102, 155, 311, 329, 584
AfiI CCNNNNNNNGG 1 cut(s) 918
AflIII ACRYGT 3 cut(s) 126, 298, 721
AgeI ACCGGT 1 cut(s) 97
AgsI TTSAA 7 cut(s) 136, 250, 464, 646, 662, 709, 993
AjnI CCWGG 2 cut(s) 606, 985
AluBI AGCT 4 cut(s) 38, 485, 595, 776
AluI AGCT 4 cut(s) 38, 485, 595, 776
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 1 cut(s) 866
AoxI GGCC 2 cut(s) 282, 515
ApeKI GCWGC 3 cut(s) 35, 482, 1087
AseI ATTAAT 1 cut(s) 53
AsiGI ACCGGT 1 cut(s) 97
Asp718I GGTACC 1 cut(s) 100
AspLEI GCGC 2 cut(s) 187, 541
AspS9I GGNCC 1 cut(s) 983
AsuHPI GGTGA 1 cut(s) 501
AvaII GGWCC 1 cut(s) 983
BaeGI GKGCMC 1 cut(s) 173
BaeI ACNNNNGTAYC 4 cut(s) 84, 84, 117, 117
BanI GGYRCC 1 cut(s) 100
BbrPI CACGTG 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 47, 494, 1074
BccI CCATC 2 cut(s) 227, 515
BceAI ACGGC 3 cut(s) 136, 179, 210
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 2 cut(s) 608, 987
BciVI GTATCC 1 cut(s) 785
BcoDI GTCTC 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 450
BfuI GTATCC 1 cut(s) 785
BisI GCNGC 3 cut(s) 36, 483, 1088
BlsI GCNGC 3 cut(s) 37, 484, 1089
Bme1390I CCNGG 2 cut(s) 608, 987
Bme18I GGWCC 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 983
BmiI GGNNCC 3 cut(s) 102, 984, 1078
BmrFI CCNGG 2 cut(s) 608, 987
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 2 cut(s) 22, 253
BmuI ACTGGG 1 cut(s) 828
Bpu10I CCTNAGC 2 cut(s) 198, 1055
BsaAI YACGTR 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 78, 350, 512, 867
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 847, 877
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse118I RCCGGY 2 cut(s) 97, 914
Bse1I ACTGG 4 cut(s) 418, 793, 823, 829
BseBI CCWGG 2 cut(s) 608, 987
BseDI CCNNGG 4 cut(s) 78, 350, 512, 867
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMII CTCAG 3 cut(s) 189, 786, 1046
BseNI ACTGG 4 cut(s) 418, 793, 823, 829
BseRI GAGGAG 1 cut(s) 1086
BseSI GKGCMC 1 cut(s) 173
BseX3I CGGCCG 1 cut(s) 282
BseXI GCAGC 3 cut(s) 47, 494, 1074
BseYI CCCAGC 1 cut(s) 1001
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 284, 517
BshNI GGYRCC 1 cut(s) 100
BshTI ACCGGT 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 98, 281, 915
BslFI GGGAC 3 cut(s) 782, 835, 849
BslI CCNNNNNNNGG 1 cut(s) 918
BsmAI GTCTC 1 cut(s) 702
BsmFI GGGAC 3 cut(s) 782, 835, 849
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 2 cut(s) 284, 517
Bsp1286I GDGCHC 1 cut(s) 173
Bsp1407I TGTACA 2 cut(s) 309, 582
Bsp143I GATC 1 cut(s) 858
Bsp19I CCATGG 2 cut(s) 78, 867
BspACI CCGC 2 cut(s) 83, 912
BspANI GGCC 2 cut(s) 284, 517
BspCNI CTCAG 3 cut(s) 190, 785, 1047
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 102, 984, 1078
BspPI GGATC 1 cut(s) 866
BspT107I GGYRCC 1 cut(s) 100
BsrFI RCCGGY 2 cut(s) 97, 914
BsrGI TGTACA 2 cut(s) 309, 582
BsrI ACTGG 4 cut(s) 418, 793, 823, 829
BssAI RCCGGY 2 cut(s) 97, 914
BssECI CCNNGG 4 cut(s) 78, 350, 512, 867
BssMI GATC 1 cut(s) 858
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 3 cut(s) 78, 512, 867
Bst2UI CCWGG 2 cut(s) 608, 987
Bst4CI ACNGT 6 cut(s) 214, 439, 454, 670, 748, 955
Bst6I CTCTTC 2 cut(s) 327, 511
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 2 cut(s) 309, 582
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 173, 189, 543, 593
BstDEI CTNAG 4 cut(s) 198, 772, 897, 1055
BstDSI CCRYGG 3 cut(s) 78, 350, 867
BstF5I GGATG 1 cut(s) 91
BstHHI GCGC 2 cut(s) 187, 541
BstKTI GATC 1 cut(s) 861
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 1 cut(s) 858
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 3 cut(s) 74, 172, 536
BstNI CCWGG 2 cut(s) 608, 987
BstNSI RCATGY 3 cut(s) 21, 725, 895
BstSCI CCNGG 2 cut(s) 606, 985
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 3 cut(s) 47, 494, 1074
BstXI CCANNNNNNTGG 2 cut(s) 79, 431
BstZI CGGCCG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 2 cut(s) 284, 517
BtgI CCRYGG 3 cut(s) 78, 350, 867
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 4 cut(s) 63, 537, 552, 805
BtsIMutI CAGTG 8 cut(s) 63, 459, 537, 552, 666, 753, 805, 951
Cac8I GCNNGC 4 cut(s) 173, 189, 543, 593
CciI TCATGA 1 cut(s) 225
CfoI GCGC 2 cut(s) 187, 541
Cfr10I RCCGGY 2 cut(s) 97, 914
Cfr13I GGNCC 1 cut(s) 983
CseI GACGC 1 cut(s) 16
Csp6I GTAC 5 cut(s) 101, 154, 310, 328, 583
CspAI ACCGGT 1 cut(s) 97
CviAII CATG 9 cut(s) 18, 22, 46, 79, 226, 478, 722, 868, 892
CviQI GTAC 5 cut(s) 101, 154, 310, 328, 583
DdeI CTNAG 4 cut(s) 198, 772, 897, 1055
DpnI GATC 1 cut(s) 860
DpnII GATC 1 cut(s) 858
EaeI YGGCCR 1 cut(s) 282
EagI CGGCCG 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 327, 511
EarI CTCTTC 2 cut(s) 327, 511
EciI GGCGGA 1 cut(s) 98
EclXI CGGCCG 1 cut(s) 282
Eco130I CCWWGG 3 cut(s) 78, 512, 867
Eco47I GGWCC 1 cut(s) 983
Eco52I CGGCCG 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 762
Eco72I CACGTG 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 606, 985
EcoT14I CCWWGG 3 cut(s) 78, 512, 867
EcoT22I ATGCAT 1 cut(s) 23
ErhI CCWWGG 3 cut(s) 78, 512, 867
FaeI CATG 9 cut(s) 21, 25, 49, 82, 229, 481, 725, 871, 895
FalI AAGNNNNNCTT 4 cut(s) 563, 595, 638, 670
FaqI GGGAC 3 cut(s) 782, 835, 849
FatI CATG 9 cut(s) 17, 21, 45, 78, 225, 477, 721, 867, 891
FauI CCCGC 1 cut(s) 919
FauNDI CATATG 1 cut(s) 1026
Fnu4HI GCNGC 3 cut(s) 36, 483, 1088
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 3 cut(s) 36, 483, 1088
GlaI GCGC 2 cut(s) 186, 540
GluI GCNGC 3 cut(s) 36, 483, 1088
GsaI CCCAGC 1 cut(s) 1005
HaeIII GGCC 2 cut(s) 284, 517
HapII CCGG 3 cut(s) 98, 281, 915
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 187, 541
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 9 cut(s) 21, 25, 49, 82, 229, 481, 725, 871, 895
Hin6I GCGC 2 cut(s) 185, 539
HinP1I GCGC 2 cut(s) 185, 539
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 464, 770
HpaII CCGG 3 cut(s) 98, 281, 915
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 4 cut(s) 124, 156, 242, 310
Hpy188I TCNGA 2 cut(s) 469, 781
Hpy188III TCNNGA 3 cut(s) 226, 250, 1054
Hpy8I GTNNAC 4 cut(s) 124, 156, 242, 310
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 656
HpyCH4III ACNGT 6 cut(s) 214, 439, 454, 670, 748, 955
HpyCH4IV ACGT 3 cut(s) 128, 298, 943
HpyCH4V TGCA 5 cut(s) 21, 35, 191, 591, 810
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 172, 536
HpyF3I CTNAG 4 cut(s) 198, 772, 897, 1055
HpySE526I ACGT 3 cut(s) 128, 298, 943
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 9 cut(s) 21, 25, 49, 82, 229, 481, 725, 871, 895
HspAI GCGC 2 cut(s) 185, 539
KpnI GGTACC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 858
LmnI GCTCC 2 cut(s) 536, 921
Lsp1109I GCAGC 3 cut(s) 47, 494, 1074
LweI GCATC 2 cut(s) 22, 253
MaeII ACGT 3 cut(s) 128, 298, 943
MaeIII GTNAC 3 cut(s) 367, 717, 944
MalI GATC 1 cut(s) 860
MboI GATC 1 cut(s) 858
MboII GAAGA 3 cut(s) 50, 344, 498
MfeI CAATTG 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 4 cut(s) 54, 245, 345, 586
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 2 cut(s) 410, 899
MnlI CCTC 6 cut(s) 193, 313, 549, 849, 1104, 1107
Mph1103I ATGCAT 1 cut(s) 23
MseI TTAA 4 cut(s) 53, 270, 498, 743
MslI CAYNNNNRTG 2 cut(s) 77, 890
MspI CCGG 3 cut(s) 98, 281, 915
MspR9I CCNGG 2 cut(s) 608, 987
MunI CAATTG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 2 cut(s) 608, 987
MwoI GCNNNNNNNGC 3 cut(s) 74, 172, 536
NcoI CCATGG 2 cut(s) 78, 867
NdeI CATATG 1 cut(s) 1026
NdeII GATC 1 cut(s) 858
NlaIII CATG 9 cut(s) 21, 25, 49, 82, 229, 481, 725, 871, 895
NlaIV GGNNCC 3 cut(s) 102, 984, 1078
NmuCI GTSAC 1 cut(s) 944
NsiI ATGCAT 1 cut(s) 23
NspI RCATGY 3 cut(s) 21, 725, 895
PagI TCATGA 1 cut(s) 225
PciI ACATGT 1 cut(s) 721
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 464
PfoI TCCNGGA 1 cut(s) 606
PinAI ACCGGT 1 cut(s) 97
PkrI GCNGC 3 cut(s) 37, 484, 1089
PleI GAGTC 1 cut(s) 764
PmaCI CACGTG 1 cut(s) 129
PmlI CACGTG 1 cut(s) 129
PpsI GAGTC 1 cut(s) 764
Ppu21I YACGTR 1 cut(s) 129
PscI ACATGT 1 cut(s) 721
PshBI ATTAAT 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 606, 985
PspCI CACGTG 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 1001
PspGI CCWGG 2 cut(s) 606, 985
PspN4I GGNNCC 3 cut(s) 102, 984, 1078
PspPI GGNCC 1 cut(s) 983
RsaI GTAC 5 cut(s) 102, 155, 311, 329, 584
RsaNI GTAC 5 cut(s) 101, 154, 310, 328, 583
RseI CAYNNNNRTG 2 cut(s) 77, 890
SaqAI TTAA 4 cut(s) 53, 270, 498, 743
SatI GCNGC 3 cut(s) 36, 483, 1088
Sau3AI GATC 1 cut(s) 858
Sau96I GGNCC 1 cut(s) 983
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 608, 987
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 2 cut(s) 22, 253
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 2 cut(s) 77, 890
Sse9I AATT 4 cut(s) 54, 245, 345, 586
SsiI CCGC 2 cut(s) 83, 912
StyD4I CCNGG 2 cut(s) 606, 985
StyI CCWWGG 3 cut(s) 78, 512, 867
TaaI ACNGT 6 cut(s) 214, 439, 454, 670, 748, 955
TaiI ACGT 3 cut(s) 131, 301, 946
TaqI TCGA 1 cut(s) 30
TasI AATT 4 cut(s) 54, 245, 345, 586
TatI WGTACW 2 cut(s) 309, 582
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 4 cut(s) 53, 270, 498, 743
Tru9I TTAA 4 cut(s) 53, 270, 498, 743
TscAI CASTG 8 cut(s) 70, 459, 537, 552, 673, 753, 812, 958
TseFI GTSAC 1 cut(s) 944
TseI GCWGC 3 cut(s) 35, 482, 1087
Tsp45I GTSAC 1 cut(s) 944
TspDTI ATGAA 3 cut(s) 242, 466, 667
TspGWI ACGGA 2 cut(s) 367, 1046
TspRI CASTG 8 cut(s) 70, 459, 537, 552, 673, 753, 812, 958
VpaK11BI GGWCC 1 cut(s) 983
VspI ATTAAT 1 cut(s) 53
XceI RCATGY 3 cut(s) 21, 725, 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.